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TranscriptomicsTranscriptomic study (RNAseq) of Brachypodium distachyon ecotypes Bd21 and Bd2-3 under submergence stress
Purpose: The goal of this study is to compare the transcriptomes expressed during submergence stress of two Brachypodium distachyon ecotypes with contrasting survival under this stress. Bd21 is a submergence sensitive ecotype with EC50 of 2.5 days and Bd2-3 is a tolerant ecotype with EC50 of 4 days....
ORGANISM(S): Brachypodium distachyon 
2016-01-04 | E-GEOD-74222 | biostudies-arrayexpress
TranscriptomicsMicroarray analysis of virus-infected Brachypodium distachyon
We used Brachypodium distachyon (BD21) as a model grass to gain insight into the affected host molecular pathways upon infection of Panicum Mosaic Virus (PMV) together with its satellite virus, Satellite Panicum Mosaic Virus (SPMV). Brachypodium plants at 2-3 leaf stage were either mock inoculated o...
ORGANISM(S): Brachypodium distachyon 
2012-11-09 | E-MEXP-3729 | biostudies-arrayexpress
TranscriptomicsA global profiling of gene expression under cold stress in Brachypodium
RNA-Seq was performed to study the change of gene expression before and after cold treatment in Brachypodium. Different change patterns were identified. We have provided a complete view of transcriptome under cold stress condition, which will deepen our understanding of gene expression regulation ...
ORGANISM(S): Brachypodium distachyon 
2013-07-15 | E-GEOD-48040 | biostudies-arrayexpress
TranscriptomicsParallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
The wild grass Brachypodium distachyon has emerged as a model system for temperate grasses and biofuel plants. However, the global analysis of miRNAs, molecules known to be key for eukaryotic gene regulation, has been limited in B. distachyon to studies examining a few samples or that rely on comput...
ORGANISM(S): Brachypodium distachyon 
2013-12-06 | E-GEOD-52441 | biostudies-arrayexpress
TranscriptomicsA global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium
PARE (parallel analysis of RNA ends) was performed to study the change of uncapped mRNAs before and after cold treatment in Brachypodium. Different change patterns were identified. We have provided a complete view of uncapped transcriptome under cold stress condition, which will deepen our understa...
ORGANISM(S): Brachypodium distachyon 
2013-07-15 | E-GEOD-48234 | biostudies-arrayexpress
TranscriptomicsA comprehensive reference transcriptome for Brachypodium distachyon grain development incorporating key developmental transitions and identifying potential regulators
Transcriptomic analyses are particularly powerful in research when they are based on detailed underlying knowledge of developmental processes, morphological/anatomical features and biochemical/metabolic processes. Our work is based on our detailed knowledge of grain development and provides an inval...
ORGANISM(S): Brachypodium distachyon 
2019-01-31 | E-MTAB-7607 | biostudies-arrayexpress
TranscriptomicsStress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium
ABSTRACT: Exposure to abiotic stresses triggers global changes in the expression of thousands of eukaryotic genes at the transcriptional 70 and post-transcriptional levels. Small RNA (smRNA) pathways and splicing both function as crucial mechanisms regulating stress-responsive gene expression. Howev...
ORGANISM(S): Brachypodium distachyon 
2015-01-20 | E-GEOD-55217 | biostudies-arrayexpress
ProteomicsChanges in the cell wall proteome of leaves in response to the high temperature stress in Brachypodium distachyon
High temperature stress leads to complex changes to plant functionality, which affects, i.a., the cell wall structure and the cell wall protein composition. In this study, the qualitative and quantitative changes in the cell wall proteome of Brachypodium distachyon leaves in response to high (40 °C)...
ORGANISM(S): Brachypodium Distachyon (ncbitaxon:15368) 
2021-04-28 | MSV000087323 | MassIVE
TranscriptomicsTranscription profiling by array of Brachypodium response to increased ambient temperature in seedlings
Microarray analysis on Brachypodium distachyon seedlings was performed to determine the response of the transcriptome to changes in ambient temperature, including identification of marker genes that were up-regulated or down-regulated by a moderate increase in growth temperature. Wild-type Brachypod...
ORGANISM(S): Brachypodium distachyon 
2013-06-07 | E-MEXP-3918 | biostudies-arrayexpress
TranscriptomicsRNA-Seq of Brachypodium distachyon callus treated with methyl-jasmonate
The aim was to determine the changes in cell wall composition and transcriptome changes following treatment with the stress hormone precursor methyl jasmonate (MeJA) in the model grass Brachypodium distachyon. The correlation between transcript changes and cell wall composition changes allowed ident...
ORGANISM(S): Brachypodium distachyon 
2017-09-04 | E-MTAB-5413 | biostudies-arrayexpress
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