Bradley A S AS - OmicsDI

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Unknown (1079)
Transcriptomics (86)
Proteomics (39)
Genomics (31)
Metabolomics (12)
Genomic (4)

Organisms

Homo sapiens (44)
Mus musculus (40)
Andropogon gerardi (27)
Bacteria (27)
Canis lupus familiaris (27)
Clostridium perfringens (27)
Cnidaria (27)
Cricetulus griseus (27)
Eukaryota (27)
Fasciola (27)
Hepatitis B virus (27)
Human betaherpesvirus 5 (27)
Madurella mycetomatis (27)
Mesocricetus auratus (27)
Miscanthus x giganteus (27)
Saccharomyces cerevisiae (6)
Rattus norvegicus (5)
Drosophila melanogaster (5)
Escherichia coli (4)
Bos taurus (2)
Ciona intestinalis (1)
Xenopus laevis (1)
Schizosaccharomyces pombe (1)
Oryza sativa (1)
Rattus rattus (1)
Saccharomyces cerevisiae S288C (1)
Gallus gallus (1)
Danio rerio (1)
Dysidea granulosa (1)
Lamellodysidea herbacea (1)

Repository

biostudies-arrayexpress (108)
pride (27)
MassIVE (10)
GNPS (8)
EGA (7)
dbGaP (4)
MetaboLights (4)
ENA (3)
PanoramaPublic (1)

Tissue

Cell culture (5)
Blood cell (2)
Cell suspension culture (2)
Epithelial cell (2)
Whole body (2)
Acute myeloid leukemia cell line (1)
Adipocyte (1)
Blood (1)
Blood plasma (1)
Brain (1)
Erythrocyte (1)
Intestine (1)
Liver (1)
Mesenteric adipose tissue (1)
Myoblast (1)
Oligodendrocyte precursor cell (1)
Photosynthetic cell (1)
Plant cell (1)
Skeletal muscle (1)
Subcutaneous adipose tissue (1)
Testis (1)

Disease

COVID-19 (2)
Uninjured (1)
Colon mucinous adenocarcinoma (NCI Metathesaurus CL029553) in DiseaseLocation rectosigmoid colon has DiseaseStaging T3N2M1 (1)
Renal cancer (1)
Alpha-1 antitrypsin deficiency (1)
Normal (1)
Acute leukemia (1)
Autosomal recessive limb-girdle muscular dystrophy type 2B (1)
Cystic fibrosis (1)
Facioscapulohumeral muscular dystrophy (1)
Neuroblastoma (1)
Neurofibromatosis 1 (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (12)
Bottom-up proteomics (7)
Data-dependent acquisition (5)
Data-independent acquisition (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
HDMSE (3)
SWATH MS (3)
Illumina HiSeq 2000 (1)
Olink affinity proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Orbitrap Fusion Lumos (3)
Agilent 6530 Accurate Mass Q-TOF (2)
LTQ FT (2)
LTQ Orbitrap Elite (2)
Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
AB SOLiD 4 System (1)
Other (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
6530 Q-TOF LC/MS (Agilent) (1)
6530 Quadrupole Time of Flight MS (Agilent Instrument) (1)
6550 Quadrupole Time-of-Flight (1)
6530A Q-TOF LC/MS (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q Exactive (1)
SYNAPT G2-Si (1)
Flow injection analysis MS - positive (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2008 (19)
2014 (15)
2013 (13)
2025 (12)
2011 (12)
2010 (10)
2009 (9)
2015 (8)
2012 (8)
2016 (7)
2024 (6)
2023 (6)
2021 (5)
2018 (5)
2026 (4)
2019 (4)
2007 (4)
2020 (4)
2005 (2)
2022 (2)
2006 (1)

CHEBI ID

CHEBI:30769 (3)
CHEBI:15741 (3)
CHEBI:30915 (3)
CHEBI:16865 (3)
CHEBI:17431 (3)
CHEBI:15351 (2)
CHEBI:78697 (2)
CHEBI:22211 (2)
CHEBI:27266 (2)
CHEBI:18186 (2)
CHEBI:17822 (2)
CHEBI:15414 (2)
CHEBI:26271 (2)
CHEBI:28044 (2)
CHEBI:25094 (2)
CHEBI:16668 (2)
CHEBI:27570 (2)
CHEBI:18237 (2)
CHEBI:17552 (2)
CHEBI:22660 (2)
CHEBI:22653 (2)
CHEBI:16449 (2)
CHEBI:16908 (2)
CHEBI:44215 (2)
CHEBI:15428 (2)
CHEBI:17126 (2)
CHEBI:14314 (2)
CHEBI:16199 (2)
CHEBI:20067 (2)
CHEBI:16704 (2)

Metabolite Name

Aconitic acid (2)
Succinic acid (2)
Citric acid (2)
Propionyl coenzyme A (1)
Phosphatidic Acid (1)
Ketoglutaric acid (1)
D-myo-Inositol-1,4,5-triphosphate (1)
Deoxyguanylate (1)
Cytidine 5-diphosphocholine (1)
Acetylamino-acetic acid (1)
6-Deoxy-L-galactonic acid (1)
3-Phosphoadenosine 5-phosphosulfate (1)
3-hydroxypentanedioic acid (1)
3-Hydroxybutyryl coenzyme A (1)
2-Deoxyuridine 5-monophosphate (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-5-cytidylic acid (1)
2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphogalactose (1)
Pyridoxamine-5-phosphate (1)
N-Hexanoyl-glycine (1)
Ne-Acetyl-lysine (1)
Nalpha-Acetyl-L-lysine (1)
L-a-Aspartyl-L-phenylalanine (1)
D-galactaric acid (1)
A-Methylbutyrylglycine (1)
Adenosine 5-phosphosulfate (1)
Uridine 5-diphospho-N-acetylgalactosamine (1)
S-(5-Adenosyl)-L-methionine (1)

First Public Date

2025 (1)
2012 (1)
2010 (1)

Study type

Transcription profiling by array (48)
ChIP-seq (16)
RNA-seq of coding RNA (15)
Comparative genomic hybridization by array (7)
Methylation profiling by high throughput sequencing (4)
ChIP-chip by tiling array (3)
Other (3)
RNA-seq of non coding RNA (3)
MNase-seq (1)
Tiling path by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2021 (122)
2023 (120)
2022 (120)
2025 (98)
2024 (86)
2019 (71)
2018 (66)
2020 (64)
2015 (61)
2016 (57)
2014 (52)
2017 (47)
2011 (38)
2013 (37)
2012 (36)
2010 (26)
2008 (25)
2009 (23)
2026 (19)
2007 (8)
2006 (3)
2005 (3)
2003 (2)
2002 (1)
2000 (1)
1999 (1)

Lab affiliation

Bradley Distinguished Professor Chair of Cancer Biology & Research Professor of Cell Biology Centre for Cancer Biology University of South Australia (2)
MRC Toxicology Unit, University of Cambridge (2)
UAB CCC MS Proteomics Facility (2)
Cambridge Institute for Medical Research, University of Cambridge (1)
Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography and University of California San Diego, 9500 Gilman Dr #0204, La Jolla, CA 92093, USA (1)
Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada Division of Respiratory Medicine, Department of Medicine, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Translational Pharmacology, Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK (1)
Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas, Campinas, SP, Brazil (1)
Department of Genome Sciences, University of Washington, Seattle, WA, USA (1)
Department of Orthopedic Surgery, Mayo Clinic, Rochester MN USA (1)
Donald Danforth Plant Scinece Center (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
Institute of Microbiology, ETH Zurich, Switzerland (1)
Laboratory of Immunoinflammation, Department of Genetics and Evolution, Microbiology, and Immunology, Institute of Biology, University of Campinas, Brazil (1)
Laboratory of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil (1)
Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK (1)
Molecular Pharmacology Program, Sloan Kettering Institute (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
School of Biomedical Sciences. University of Queensland (1)
School of Biomedical and Healthcare Sciences Plymouth University Peninsula Schools of Medicine and Dentistry Plymouth University (UK) (1)
Stanford University, California, United States (1)
Structural Studies Division MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
The University of Texas, MD Anderson Cancer Center, Department of Melanoma Med Oncology, Houston, TX 77045 (1)
University of Colorado School of Medicine Biochemistry and Molecular Genetics Denver, CO (1)

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Extreme genome diversity and cryptic speciation in a harmful algal bloom forming eukaryote

Harmful algal blooms (HABs) of the toxic haptophyte Prymnesium parvum are a recurrent problem in many inland and estuarine waters around the world. Strains of P. parvum vary in the toxins they produce and in other physiological traits associated with HABs, but the genetic basis ...

2023-04-26 | MTBLS5893 | MetaboLights

U2AF1 mutations alter splice site recognition in hematological malignancies

Whole-exome sequencing studies have identified common mutations affecting genes encoding components of the RNA splicing machinery in hematological malignancies. Here, we sought to determine how mutations affecting the 3' splice site recognition factor U2AF1 altered its normal role in RNA splicing. W...

ORGANISM(S): Homo sapiens

2014-09-23 | E-GEOD-58871 | biostudies-arrayexpress

Characterization of Vitellogenin and Vitellogenin Receptor of Conopomorpha sinensis Bradley and Their Responses to Sublethal Concentrations of Insecticide.

Not available

S-EPMC6154279 | biostudies-literature

Insights into the Function of a Second, Nonclassical Ahp Peroxidase, AhpA, in Oxidative Stress Resistance in Bacillus subtilis.

Not available

S-EPMC4800881 | biostudies-literature

The Dynamic Transcriptome of Schizosaccharomyces pombe Revealed by RNA/DNA Hybrid Mapping

We determined the strand-specific transcriptome of the fission yeast S. pombe under multiple growth conditions using a novel RNA/DNA hybridization mapping (HybMap) technique. HybMap uses an antibody against an RNA/DNA hybrid to detect RNA molecules hybridized to a high density DNA oligonucleotide ti...

ORGANISM(S): Schizosaccharomyces pombe

2008-06-29 | E-GEOD-11619 | biostudies-arrayexpress

Long-term financial burden of breast cancer: experiences of a diverse cohort of survivors identified through population-based registries.

Not available

S-EPMC3986387 | biostudies-literature

Transcriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation

Metabolite concentrations can regulate gene expression, which can in turn regulate metabolic activity. The extent to which functionally related transcripts and metabolites show similar patterns of concentration changes, however, remains unestablished. We have therefore measured and analyzed the met...

ORGANISM(S): Saccharomyces cerevisiae

2009-02-01 | E-GEOD-11754 | biostudies-arrayexpress

Ecdysone Receptor (EcR) and Ultraspiracle Protein (USP) Genes From Conopomorpha sinensis Bradley Eggs: Identification and Expression in Response to Insecticides.

Not available

S-EPMC7380065 | biostudies-literature

A synthetically methylotrophic Escherichia coli as a chassis for bioproduction

Proteome characterization of three E. coli strains: a methanol-dependent strain (MEvo1-0) and two synthetically methylotrophic strains (MEcoli_ref_1, MEcoli_ref_2)

ORGANISM(S): Escherichia coli

2024-02-08 | PXD046243 | Pride

Transcription profiling of field-caught permethrin-resistant Anopheles gambiae shows over-expression of CYP6P3, a P450 that metabolizes pyrethroids

Field-caught permethrin-resistant Anopheles gambiae s.s. overexpress CYP6P3, a P450 that metabolizes pyrethroids

ORGANISM(S): Anopheles gambiae s.s.

2009-01-17 | E-MTAB-52 | biostudies-arrayexpress

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