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TranscriptomicsSmall RNAs in budding yeast
RNAi, a gene-silencing pathway triggered by double-stranded RNA, is conserved in diverse eukaryotic species but has been lost in the model budding yeast, Saccharomyces cerevisiae. We report that RNAi is present in other budding-yeast species, including Saccharomyces castellii and Candida albicans. ...
ORGANISM(S): Vanderwaltozyma polyspora 
2009-09-10 | E-GEOD-17871 | biostudies-arrayexpress
MetabolomicsThe putative ceramide-conjugation protein Cwh43 regulates G0 quiescence, nutrient metabolism and lipid homeostasis in fission yeast (Metabolome assay)
Cellular nutrient states control whether cells proliferate, or whether they enter or exit quiescence. Here, we report characterizations of fission yeast temperature-sensitive (ts) mutants of the evolutionarily conserved transmembrane protein, Cwh43, and explore its relevance to utilization of glucos...
2018-08-17 | MTBLS577 | MetaboLights
ProteomicsAsymmetrically inherited older proteins in budding yeast (synchronized culture method-1)
In budding yeast, damaged organelles and biomolecules are symmetrically segregated between mother and daughter cells, which can influence the replicating aging of mother cells. In some cases, older proteins are prone to be damaged and decline in their functions compared to newly synthesized proteins...
ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast) 
2017-10-08 | PXD005114 | JPOST Repository
MetabolomicsThe putative ceramide-conjugation protein Cwh43 regulates G0 quiescence, nutrient metabolism and lipid homeostasis in fission yeast (Lipidome assay)
Cellular nutrient states control whether cells proliferate, or whether they enter or exit quiescence. Here, we report characterizations of fission yeast temperature-sensitive (ts) mutants of the evolutionarily conserved transmembrane protein, Cwh43, and explore its relevance to utilization of glucos...
2018-08-21 | MTBLS578 | MetaboLights
GenomicsCentromere-Like Regions in Budding Yeast
Accurate chromosome segregation requires centromeres (CENs), the chromosomal sites where kinetochores form, to bridge DNA and attach to microtubules. In contrast to most eukaryotes, Saccharomyces cerevisiae possesses sequence-defined point centromeres. Chromatin immunoprecipitation followed by seq...
ORGANISM(S): Saccharomyces cerevisiae 
2013-01-18 | E-GEOD-31466 | biostudies-arrayexpress
ProteomicsAsymmetrically inherited older proteins in budding yeast (synchronized culture method-2)
In budding yeast, damaged organelles and biomolecules are symmetrically segregated between mother and daughter cells, which can influence the replicating aging of mother cells. In some cases, older proteins are prone to be damaged and decline in their functions compared to newly synthesized proteins...
ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast) 
2017-10-08 | PXD005115 | JPOST Repository
TranscriptomicsBudding yeast cohesin (Mcd1) distribution in mitotically arrested cells
genomic localization of the budding yeast cohesin complex was mapped in mitotically arrested cells by Mcd1 ChIP followed by hybridization to high-density tiled microarrays Cells were synchronized first in G1 and then released into media containing the microtubule poison nocodazole. Cells were fixed ...
ORGANISM(S): Saccharomyces cerevisiae 
2009-09-30 | E-GEOD-18021 | biostudies-arrayexpress
TranscriptomicsBudding yeast respiratory oscillations in a transient state
RNAseq analysis of budding yeast respiratory oscillations was performed at high temporal resolution (4 min, 24 samples), covering 2.5 cycles of the short period oscillation of the IFO 0233 strain of budding yeast. This and related systems were previously analyzed by microarrays and RNAseq, but the e...
ORGANISM(S): Saccharomyces cerevisiae 
2022-07-11 | E-MTAB-11901 | biostudies-arrayexpress
ModelsBudding Yeast Cell Cycle 2009
Abstract The budding yeast Saccharomyces cerevisiae is a model organism that is commonly used to investigate control of the eukaryotic cell cycle. Moreover, because of the extensive experimental data on wild type and mutant phenotypes, it is also particularly suitable for mathematical modelling and ...
2423 | Cell Collective
ModelsBudding Yeast Cell Cycle
It has been suggested that irreducible sets of states in Probabilistic Boolean Networks correspond to cellular phenotype. In this study, we identify such sets of states for each phase of the budding yeast cell cycle. We find that these ergodic sets underly the cyclin activity levels during each phas...
2404 | Cell Collective
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