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TranscriptomicsIntegrating Large-Scale Functional Genomic Data to Dissect the Complexity of Yeast Regulatory Networks
A major goal of biology is the construction of networks that predict complex system behavior. We combine multiple types of molecular data, including genotypic, expression, transcription factor binding site (TFBS), and protein-protein interaction (PPI) data previously generated from a number of yeas...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-11111 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Aggregatibacter actinomycetemcomitans serotype b strains of JP2 and non-JP2 genotypes using a pan-genome microarray
To characterize the differences in pattern of gene expression between JP2 and non-JP2 genotypes of A. actinomycetemcomitans. Transcriptome analysis of 3 strains of JP2 and 2 strains of non-JP2 genotypes of A. actinomycetemcomitans was performed Transcripome of three strains of JP2 genotype (HK1651, ...
ORGANISM(S): Aggregatibacter actinomycetemcomitans 
2012-09-28 | E-GEOD-38943 | biostudies-arrayexpress
ProteomicsAc30
Catalogue changes in budding yeast (S. cerevisiae) protein expression following brief treatment with mating hormone, with the endpoint of identifying translationally controlled proteins. baseline (light ICAT label) is protein from an asynchrnous culture
ORGANISM(S): Saccharomyces Cerevisiae 
2003-12-31 | PAe000084 | PeptideAtlas
TranscriptomicsTranscription profiling of human lpshigh and lpslow individuals to reveal interindividual variability in LPS responses
We used an unbiased approach to identify differences in gene expression that may account for the high degree of interindividual variability in inflammatory responses to LPS in the normal human population. We measured LPS-induced cytokine production ex vivo in whole blood from 102 healthy human subje...
ORGANISM(S): Homo sapiens 
2007-09-07 | E-GEOD-3491 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Aggregatibacter actinomycetemcomitans strains isolated from the same individual during short term persistent infections using a pan-genome microarray
To characterize the differences in pattern of gene expression between different pairs of Aggregatibacter actinomycetemcomitans strains (SCC393 vs A160, SCC1398 vs SCC4092, and S23A vs I23C), where each pair was isolated from an individual over time. The microarray was used to examine the transcripto...
ORGANISM(S): Aggregatibacter actinomycetemcomitans 
2013-12-31 | E-GEOD-43074 | biostudies-arrayexpress
TranscriptomicsComparative genomic analysis of Aggregatibacter actinomycetemcomitans strains during short term persistent infections using a pan-genome microarray
To analyze the gain and lost of genes in Aggregatibacter actinomycetemcomitans during short-term persistent infection in the same host The microarray was used to compare gene contents of 4 different pairs of Aggregatibacter actinomycetemcomitans strains (SCC393 vs A160, SCC1398 vs SCC4092, SCC2302 v...
ORGANISM(S): Aggregatibacter actinomycetemcomitans 
2013-12-31 | E-GEOD-42953 | biostudies-arrayexpress
TranscriptomicsComparative genomic analysis of Aggregatibacter actinomycetemcomitans of JP2 and non-JP2 genotypes using a pan-genome microarray
To assess the performance of our custom-designed pan-genome microarray and characterize the differences in gene content between JP2 and non-JP2 genotypes of A. actinomycetemcomitans. Comparative genomic hybridization reactions were carried out to assess the performance of our pan-genome microarray b...
ORGANISM(S): Aggregatibacter actinomycetemcomitans 
2012-09-28 | E-GEOD-39143 | biostudies-arrayexpress
ProteomicsS.cerevisiae - Whole organism, SC (Serikawa,mcp,2003)
abundance based on Spectral counting, Interaction consistency score: 1.6, Coverage: 20
ORGANISM(S): 4932 
2003-00-00 | 2226156413 | PAXDB
TranscriptomicsHDL suppresses the type I interferon response
Background: High density lipoprotein (HDL) protects the artery wall by removing cholesterol from lipid-laden macrophages. However, recent evidence suggests that it might also inhibit atherogenesis by combating inflammation. Methods and Results: To identify potential anti-inflammatory mechanisms, we ...
ORGANISM(S): Mus musculus 
2010-10-01 | E-GEOD-19340 | biostudies-arrayexpress
TranscriptomicsCross-platform comparability of microarray data
To facilitate collaborative research efforts between multi-investigator teams using DNA microarrays, we identified sources of error and data variability between laboratories and across microarray platforms and methods to accommodate this variability. RNA expression data were generated in seven labo...
ORGANISM(S): Mus musculus 
2010-06-10 | E-GEOD-2458 | biostudies-arrayexpress
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