Cadherin-17 - OmicsDI

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Transcriptomics (497)
Unknown (156)
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Organisms

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Organisms

Homo sapiens (9)
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Repository

biostudies-arrayexpress (504)
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Technology Type

Mass Spectrometry (9)
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Mass spectrometry (1)
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Gel-based experiment (1)
MSE (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
Illumina HiSeq 2500 (4)
Illumina HiSeq 4000 (4)
NextSeq 550 (3)
Illumina HiSeq 2000 (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Scanning hardware (2)
Illumina MiSeq (2)
NextSeq 500 (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion Lumos (2)
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Chromium Next GEM Chip G (1)
10X v3 (1)
Illumina Genome Analyzer IIx (1)
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NextSeq 2000 (1)
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TSQ Quantiva (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2010 (80)
2015 (68)
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2009 (25)
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2018 (1)
2003 (1)

First Public Date

2026 (5)
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2014 (3)
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2025 (1)
2023 (1)
2022 (1)
2019 (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study status

Not yet recruiting (1)

Study type

Transcription profiling by array (341)
RNA-seq of coding RNA (78)
Unknown experiment type (19)
ChIP-seq (12)
Comparative genomic hybridization by array (8)
RNA-seq of non coding RNA (8)
Transcription profiling by SAGE (7)
Transcription profiling by tiling array (5)
RNA-seq of coding RNA from single cells (5)
Methylation profiling by array (4)
ChIP-chip by tiling array (3)
Other (3)
Proteomic profiling by array (2)
Baseline (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
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ScATAC-seq (1)
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RNA-seq of total RNA (1)
Interventional (1)

Release Date

2010 (85)
2015 (74)
2012 (66)
2013 (60)
2011 (56)
2014 (48)
2008 (41)
2009 (25)
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2016 (22)
2023 (19)
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2019 (14)
2007 (14)
2018 (13)
2020 (11)
2017 (10)
2006 (9)
2026 (7)
2004 (4)
2003 (3)
2005 (2)

Lab affiliation

Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain (1)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (1)
Department of Pathology, University of Michigan, 1150 W Medical Center Dr, 7510D MSRB1, Ann Arbor, MI, 48109. (1)
Institute of Zoology and Biomedical Research Laboratory of Physiology and Toxicology of Reproduction, Faculty of Biology, Jagiellonian University, Krakow, Poland (1)
Renal Research Group, Department of Clinical Medicine, Faculty of Medicine, University of Bergen, Norway (1)
Systematic Proteomics & Bioanalytics, Institute for Experimental Medicine, University of Kiel, Kiel, Germany (1)
Translational Biomedical Proteomics Institute of Molecular and Cell Biology 61 Biopolis Drive, #7-12/13, Proteos, Singapore 138673 (1)
Unidade de Espectrometria de Massas e Proteômica (UEMP) Programa de Biologia Estrutural Bloco D, Primeiro andar, Sala 45 – Centro de ciências da saúde - Universidade Federal do Rio de Janeiro (1)
i3S - Institute for Research and Innovation in Health, University of Porto, Portugal (1)