Cai Chen C - OmicsDI

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Unknown (4350)
Proteomics (99)
Transcriptomics (40)
Metabolomics (34)
Genomics (12)
Other (1)

Organisms

Homo sapiens (81)
Mus musculus (31)
Arabidopsis thaliana (7)
Oryza sativa (5)
Severe acute respiratory syndrome coronavirus 2 (5)
Caenorhabditis elegans (2)
Schistosoma japonicum (1)
Hordeum vulgare subsp. spontaneum (1)
Setaria italica (1)
Oryza sativa Japonica Group (1)
Plasmodium falciparum (1)
Rattus norvegicus (1)
Sus scrofa (1)
Amaryllidaceae (1)
Dimocarpus longan (1)
Ganoderma lingzhi (1)
Oryctolagus cuniculus (1)
Rattus rattus (1)
Artemisia annua (1)
Drosophila melanogaster (1)
Enterococcus faecalis (1)
Macaca mulatta (1)
Mycobacterium tuberculosis OFXR-32 (1)
Nicotiana tabacum (1)
Saccharomyces cerevisiae (1)
Sipunculus nudus (1)
Spinacia oleracea (1)
Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)

Organisms

Caenorhabditis elegans (1)
Arabidopsis thaliana (1)
Homo sapiens (1)

Repository

pride (56)
biostudies-arrayexpress (43)
iProX (38)
MetaboLights (32)
EGA (4)
MassIVE (4)
ENA (3)
geo (2)
GNPS (2)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (13)
Epithelial cell (8)
Blood plasma (5)
Liver (5)
Brain (4)
Leaf (4)
Hepatocyte (3)
Extracellular vesicle (2)
Kidney (2)
Lung (2)
Peripheral blood mononuclear cell (2)
Thyroid nodule (2)
B-cell lymphoma cell (1)
Blood serum (1)
Flower bud (1)
Heart (1)
Lymph node (1)
Macrophage (1)
Megakaryocyte (1)
Multiple myeloma cell line (1)
Mycelial cord (1)
Permanent cell line cell (1)
Placenta (1)
Plant cell (1)
Prostate adenocarcinoma cell (1)
Shoot (1)
Spleen (1)
Stem cell (1)
Testis (1)
Uterine cervix (1)

Disease

Breast cancer (2)
Colon cancer (2)
Not Available (1)
Alzheimer's disease (1)
Brain cancer (1)
Cervix carcinoma (1)
Endometrial Endometrioid Adenocarcinoma (1)
Hepatocellular carcinoma (1)
Liver cancer (1)
Lung adenocarcinoma (1)
Lymphoma (1)
Malaria (1)
Medullary thyroid carcinoma (1)
Myeloproliferative neoplasm (1)
Prostate adenocarcinoma (1)
Thyroid cancer (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (32)
Mass spectrometry (25)
Bottom-up proteomics (9)
Mass spectrometry assay (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
SWATH MS (5)
Gel-based experiment (3)
Data-independent acquisition (2)
SRM/MRM (2)
Top-down proteomics (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (13)
Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - negative - hilic (4)
Q Exactive HF (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - alternating - hilic (2)
HiSeq X Ten (1)
Instrument (1)
Orbitrap Eclipse (1)
API 5500 QTRAP (AB Sciex) (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Xevo QTof MS (Waters) (1)
LTQ (1)

Publication Date

2023 (25)
2022 (22)
2024 (17)
2025 (17)
2021 (16)
2020 (15)
2014 (11)
2026 (11)
2013 (10)
2016 (6)
2012 (6)
2018 (6)
2015 (5)
2011 (3)
2019 (3)
2009 (1)
2008 (1)
2007 (1)
2017 (1)
2010 (1)

CHEBI ID

CHEBI:17895 (12)
CHEBI:30769 (12)
CHEBI:16467 (11)
CHEBI:16828 (10)
CHEBI:16335 (9)
CHEBI:17203 (9)
CHEBI:17750 (9)
CHEBI:18050 (9)
CHEBI:15741 (8)
CHEBI:15891 (8)
CHEBI:16015 (8)
CHEBI:16414 (8)
CHEBI:16704 (8)
CHEBI:16708 (8)
CHEBI:16857 (8)
CHEBI:16919 (8)
CHEBI:17351 (8)
CHEBI:17368 (8)
CHEBI:17568 (8)
CHEBI:18019 (8)
CHEBI:18183 (8)
CHEBI:27248 (8)
CHEBI:28044 (8)
CHEBI:15428 (7)
CHEBI:15756 (7)
CHEBI:17154 (7)
CHEBI:17268 (7)
CHEBI:17295 (7)
CHEBI:17405 (7)
CHEBI:28875 (7)

Metabolite Name

Betaine (8)
L-Arginine (8)
L-Glutamine (8)
Uridine (8)
Adenine (7)
L-Tyrosine (7)
Uracil (7)
Adenosine (6)
Creatine (6)
L-Tryptophan (6)
Guanine (5)
Hippuric acid (5)
Hypoxanthine (5)
L-Lysine (5)
L-Phenylalanine (5)
Linoleic acid (5)
Palmitic acid (5)
Salicylic acid (5)
3-Hydroxybutyric acid (4)
4-Pyridoxic acid (4)
Arginine (4)
Betaine aldehyde (4)
Bilirubin (4)
Choline (4)
Citric acid (4)
Creatinine (4)
Cytidine (4)
Cytosine (4)
Dimethylglycine (4)
Fumaric acid (4)

First Public Date

2014 (2)
2023 (1)

Modification

15.994915 (2)
57.021464 (2)
42.010565 (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (11)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
Other (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by RT-PCR (1)

Release Date

2025 (692)
2022 (610)
2023 (575)
2024 (530)
2021 (443)
2020 (358)
2019 (222)
2018 (188)
2017 (163)
2016 (150)
2015 (109)
2014 (88)
2026 (88)
2013 (61)
2012 (40)
2011 (35)
2010 (17)
2009 (9)
2008 (7)
2007 (3)
2006 (2)
2004 (1)
2000 (1)

Lab affiliation

Univeristy of Georgia (5)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Shenzhen People’s Hospital (2)
University of Science and Technology of China (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 5Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA 8Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Aarhus University, Department of Molecular Biology and Genetics (1)
BGI-Shenzhen (1)
Bone Marrow Transplantation Center, Department of Hematology, The First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
Central Laboratory, Wuxi Maternity and Child Health Care Hospital Affiliated to Nanjing Medical University (1)
College of Veterinary Medicine, China Agricultural University, Beijing 100193, China (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Cancer Biology, Wake Forest Baptist Hospital (1)
Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai (1)
Department of Endocrinology and Metabolism, the Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, P.R. China 510630 (1)
Department of Gynecological Oncology, Tongji Hospital, Tongji Medical College,Huazhong University of Science and Technology (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University; Key Laboratory of Carcinogenesis and Cancer Invasion of Ministry of Education, Key Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
ETH Zurich (1)
Huazhong Agricultural University (1)
Institute of High Energy Physics, CAS (1)
Institute of Plant Virology, Ningbo University, Ningbo, China (1)
Jiangsu Academy of Agricultural Sciences (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)
Joint Proteomics Facility (1)
Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education, Research Center of Super Rice Engineering and Technology, Jiangxi Agricultural University. No. 1101 Zhimin Avenue, Economic and Technological Development Zone, Nanchang City, Jiangxi Province (1)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (1)
Northeast Forestry University (1)

Tags

xref:PubMed:24332851 (1)
xref:PubMed:29581250 (1)

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Expression analysis of C. elegans wild-type N2 and rsks-1, daf-2, daf-2 rsks-1 and daf-16; daf-2 rsks-1 mutants

Investigation of whole genome gene expression level changes in C. elegans rsks-1, daf-2, daf-2 rsks-1 and daf-16; daf-2 rsks-1 mutant compared to the wild-type N2 strain. The mutants have altered longevity phenotypes. The mutants analyzed in this study are further described in Di Chen, Patrick Wai-...

ORGANISM(S): Caenorhabditis elegans

2013-11-14 | E-GEOD-52340 | biostudies-arrayexpress

Expression analysis of C. elegans wild-type N2 and rsks-1, daf-2, daf-2 rsks-1 and daf-16; daf-2 rsks-1 mutants

ORGANISM(S): Caenorhabditis elegans

2013-11-14 | GSE52340 | GEO

The complete chloroplast genome and phylogenetic analysis of Bauhinia glauca subsp. hupehana (Craib) T. C. Chen 1988.

Not available

S-EPMC10930098 | biostudies-literature

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Targeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7832 | MetaboLights

Nucleophile promoted gold redox catalysis with diazonium salts: C-Br, C-S and C-P bond formation through catalytic Sandmeyer coupling.

Not available

S-EPMC6024175 | biostudies-literature

Balanced sparse model for tight frames in compressed sensing magnetic resonance imaging.

Not available

S-EPMC4388626 | biostudies-literature

Hypersensitive C-reactive protein-atherogenic index as a novel marker for metabolic dysfunction-associated steatotic liver disease in type 2 diabetes mellitus.

Not available

S-EPMC12672254 | biostudies-literature

Fortunella venosa (Champ. ex Benth.) C. C. Huang and F. hindsii (Champ. ex Benth.) Swingle as Independent Species: Evidence From Morphology and Molecular Systematics and Taxonomic Revision of Fortunella (Rutaceae).

Not available