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GenomicsGenome wide H3K9ac and SAGA occupancy at OX growth phase and RC quiescent phase of yeast metabolic cycle
We found acetyl-CoA levels increase when cells are committed to growth. We also found 3 components of the SAGA complex, Spt7p, Sgf73p and Ada3p as well as histones are dynamically acetylated in tune with the acetyl-CoA levels. ChIP-seq study reveals SAGA and H3K9ac predominantly occupy growth genes ...
ORGANISM(S): Saccharomyces cerevisiae 
2011-05-19 | E-GEOD-28734 | biostudies-arrayexpress
TranscriptomicsPhf19 knockdown effect on F9 embryonal carcinoma cells
PCL family protein Phf19/Pcl3 is one of the accessory components of the PRC2 core complex, and Phf19 is highly expressed in murine ES cells and an ES cell-like embryonic carcinoma cell line, F9 cells. Here we performed microarray analysis of embryonal carcinoma cell line F9 following Phf19 knockdown...
ORGANISM(S): Mus musculus 
2012-12-20 | E-GEOD-42463 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse retina from an animal model of Huntingdons disease vs. Spinocerebellar ataxia (SCA) model
To elucidate the pathways involved in the SCA7 retinal degeneration, we used DNA GeneChips and compared the gene expression profiles of the mutant mice (R7E) and the control ones (R7N). We performed these experiments at the onset stage of the disease (3w) as well as on the moderate one (9w) in order...
ORGANISM(S): Mus musculus 
2009-02-07 | E-GEOD-3634 | biostudies-arrayexpress
UnknownArbuscular mycorrhizal fungi improve selenium uptake by modulating root transcriptome of rice (Oryza sativa L.).
Not available
S-EPMC10547891 | biostudies-literature
GenomicsA high-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast
Under continuous, glucose-limited conditions, budding yeast exhibit robust metabolic cycles associated with major oscillations of gene expression and metabolic state. However, how such fluctuations might be coordinately linked to changes in chromatin status is less well understood. Here, we examine ...
ORGANISM(S): Saccharomyces cerevisiae 
2014-08-31 | E-GEOD-52339 | biostudies-arrayexpress
UnknownMETTL3 Modulates Osteoclast Differentiation and Function by Controlling RNA Stability and Nuclear Export.
Not available
S-EPMC7084668 | biostudies-literature
UnknownGypenosides Altered Hepatic Bile Acids Homeostasis in Mice Treated with High Fat Diet.
Not available
S-EPMC6076974 | biostudies-literature
GenomicsGenome-wide Ifh1p occupancy at the OX growth phase and RC quiescent phase of the yeast metabolic cycle
We found ribosomal transcription factor Ifh1p is dynamically acetylated and phosphorylated in response to nutrient cues. ChIP-seq data revealed dynamic binding to ribosomal genes (RP) during the OX growth phase of the yeast metabolic cycle (YMC) when RP genes are highly induced, and weaker binding i...
ORGANISM(S): Saccharomyces cerevisiae 
2013-07-05 | E-GEOD-39147 | biostudies-arrayexpress
UnknownNicotinic Receptor Subunit Distribution in Auditory Cortex: Impact of Aging on Receptor Number and Function.
Not available
S-EPMC7380976 | biostudies-literature
UnknownPhenotypic and genomic characterization of Paenibacillus salivarius sp. nov., isolated from the human oral cavity.
Not available
S-EPMC12613345 | biostudies-literature
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