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MetabolomicsMetabolomic homeostasis shifts after callus formation and shoot regeneration in tomato
Plants can regenerate from a variety of tissues on culturing in appropriate media. However, the metabolic shifts involved in callus formation and shoot regeneration are largely unknown. The metabolic profiles of callus generated from tomato (Solanum lycopersicum) cotyledons and that of shoot regener...
2018-06-29 | MTBLS447 | MetaboLights
TranscriptomicsComparison of Arabidopsis callus
Arabidopsis thaliana plant expressing 35S:WIND1 shows callus-like morphology without hormone treatment. Transcriptomes of the callus-like cell expressing 35S:WIND1, callus of T87 cultured cell, 2,4-D-induced callus and control seedling plant were compared by Agilent microarray. Comparison of four ki...
ORGANISM(S): Arabidopsis thaliana 
2011-05-17 | E-GEOD-21631 | biostudies-arrayexpress
TranscriptomicsMolecular events during the early stage of callus induction
Profiling the transcriptome of the early stage of Arabidopsis callus induction variable_1 = root explants variable_2 = aerial organ explants variable_3 = 0 h on callus inducing medium variable_4 = 12 h on callus inducing medium variable_5 = 24 h on callus inducing medium variable_6 = 48 h on callus ...
ORGANISM(S): Arabidopsis thaliana 
2012-07-22 | E-GEOD-29543 | biostudies-arrayexpress
GenomicsDNase I hypersensitive sites in two tissues of rice
Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide ...
ORGANISM(S): Oryza sativa 
2011-11-09 | E-GEOD-26610 | biostudies-arrayexpress
TranscriptomicsAge-related change of callus formation capability in Arabidopsis hypocotyls
Transcriptional profiling of age-related change of callus formation capability in Arabidopsis hypocotyls Organogenesis in vitro consists of many aspects such as phytohormone perception, dedifferentiation of differentiated cell to acquire organogenic competence, and re-entry of quiescent cells into c...
ORGANISM(S): Arabidopsis thaliana 
2011-06-19 | E-GEOD-27508 | biostudies-arrayexpress
ProteomicsTime-dependent proteomic signatures associated with embry-ogenic callus induction in Carica papaya L.
The cost of Carica papaya production through seed-based propagation is increased by sex segregation, making in vitro techniques a more appealing option for clonal propagation. Inducing embryogenic callus with 2,4-dichlorophenoxyacetic acid (2,4-D) hold the potential to large-scale cloning, although ...
ORGANISM(S): Carica papaya 
2024-01-26 | PXD046521 | Pride
Bottom-up proteomics  carica papaya  embryogenic callus  somatic embryos  time-series analysis. 
TranscriptomicsTranscriptomes of Two Esca Relevant Fungi, Phaeoacremonium aleophilum and Phaeomoniella chlamydospora, Respond Very Differently to Co-cultured Vitis callus Culture
In order to understand how P.al and P.ch respond to the environment set by V. vinifera we analyzed the transcriptomes of two fungi in axenic or mixed cultures with V. vinifera plant cells (callus culture). We could observe that these fungi respond with different strategies to the plant cell challang...
ORGANISM(S): Phaeomoniella chlamydospora 
2016-04-01 | E-GEOD-67197 | biostudies-arrayexpress
TranscriptomicsTranscriptome of rice seedling and callus based on RNA-seq method
To support our research of epigenomics in rice genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-seq) using rice seedling and callus tissues. We obtained a total of 40.1 M reads from seedling and 29.6 M reads from callus.The RNA-seq data derived from the replicates showed high cor...
ORGANISM(S): Oryza sativa Japonica Group 
2011-11-09 | E-GEOD-33265 | biostudies-arrayexpress
GenomicsAquilaria malaccensis strain:callus
Aquilaria malaccensis callus culture stress treatment transcriptome
PRJDB4215 | ENA
TranscriptomicsMicro-array analysis of WT and AtISWI in callus formation
Plant regeneration could be achieved via formation of a pluripotent cell mass termed callus, nature of which is a group of fast-dividing root primordium cells. However, mechanisms that strictly control the stem cell fate transition in regeneration of callus remain elusive. Here we show that the Arab...
ORGANISM(S): Arabidopsis thaliana 
2014-05-15 | E-GEOD-57145 | biostudies-arrayexpress
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