Campbell H H - OmicsDI

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Unknown (4149)
Transcriptomics (122)
Proteomics (92)
Genomics (62)
Metabolomics (7)
Models (1)
Genomic (1)

Organisms

Homo sapiens (126)
Andropogon gerardi (54)
Bacteria (54)
Bartonella quintana JK 31 (54)
Canis lupus familiaris (54)
Mus musculus (29)
Burkholderia cenocepacia (9)
Saccharomyces cerevisiae (7)
Burkholderia multivorans (5)
Staphylococcus aureus (3)
Nostoc punctiforme PCC 73102 (2)
Aspergillus niger (2)
Mammalia (1)
Nostoc punctiforme (1)
Roseburia inulinivorans DSM 16841 (1)
Populus balsamifera (1)
Culex quinquefasciatus (1)
Burkholderia lata (1)
Burkholderia ambifaria (1)
Leishmania major (1)
Populus maximowiczii x Populus nigra (1)
Lepeophtheirus salmonis (1)
Columba livia (1)
Zea mays (1)
Mycobacterium tuberculosis (1)
Solanum tuberosum (1)
Enterococcus faecalis (1)
Caenorhabditis elegans (1)
Triticum aestivum (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (129)
EGA (59)
pride (54)
PeptideAtlas (26)
MassIVE (7)
MetaboLights (7)
BioModels (1)
dbGaP (1)
PAXDB (1)

Tissue

Others (17)
Cell culture (11)
Epithelial cell (8)
Blood plasma (6)
Brain (6)
Kidney (6)
Heart (5)
Liver (4)
Lung (4)
Spleen (3)
Kidney (2)
Blood platelet (2)
HeLa cell (2)
Peripheral blood mononuclear cell (2)
Skin (2)
Small intestine (2)
Testis (2)
U2-OS cell (2)
Urine (2)
Digestive System (1)
Lung (1)
Plasma Non-glyco (1)
Adrenal gland (1)
B cell (1)
Bladder (1)
Bone marrow (1)
Breast (1)
CAL-51 cell (1)
Cell suspension culture (1)
Colon (1)

Disease

Disease free (3)
Breast cancer (2)
Age related macular degeneration (1)
Bone osteosarcoma (1)
COVID-19 (1)
Colorectal cancer (1)
Duchenne muscular dystrophy (1)
Endometrial carcinoma (1)
Kidney disease (1)
Melanoma (1)
Parkinson's disease (1)
Peripartum cardiomyopathy (1)
Prostate cancer (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (23)
SWATH MS (11)
Bottom-up proteomics (10)
Mass spectrometry (6)
Data-dependent acquisition (6)
Illumina HiSeq 2000 (4)
Data-independent acquisition (4)
Gel-based experiment (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina Genome Analyzer II (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina_660K/Illumina_670K (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

TripleTOF 5600 (26)
NextSeq 500 (5)
Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
LTQ FT (2)
LTQ Orbitrap XL (2)
D1000 ScreenTape Analysis, Qubit Fluorometer. (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
QTRAP 6500 (1)
Xevo TQ MS (Waters) (1)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (34)
2012 (24)
2013 (23)
2010 (17)
2015 (16)
2011 (15)
2020 (14)
2022 (11)
2008 (9)
2026 (8)
2023 (8)
2025 (8)
2021 (7)
2016 (7)
2009 (5)
2007 (4)
2024 (4)
2018 (3)
2019 (3)
2005 (2)
2006 (1)
2004 (1)
2017 (1)

UNIPROT ID/AC

35KD_MYCTU (1)
3BHS_MYCTU (1)
3MGH_MYCTU (1)
6PGL_MYCTU (1)
83332.Rv1180 (1)
A85A_MYCTU (1)
A85B_MYCTU (1)
A85C_MYCTU (1)
AAC2_MYCTU (1)
AAT_MYCTU (1)
ABC1_MYCTU (1)
ACDC_MYCTU (1)
ACDH_MYCTU (1)
ACDP_MYCTU (1)
ACEA_MYCTU (1)
ACKA_MYCTU (1)
ACNA_MYCTU (1)
ACNR_MYCTU (1)
ACPM_MYCTU (1)
ACSA_MYCTU (1)
ACYP_MYCTU (1)
ADD_MYCTU (1)
ADHB_MYCTU (1)
ADHC_MYCTU (1)
ADOK_MYCTU (1)
AFTA_MYCTU (1)
AFTB_MYCTU (1)
AFTC_MYCTU (1)
AHPC_MYCTU (1)
AHPD_MYCTU (1)

ENSEMBL ID

ENSG00000170477 (16)
ENSG00000147251 (6)
ENSG00000247315 (5)
ENSG00000229353 (4)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17750 (5)
CHEBI:25094 (5)
CHEBI:32816 (5)
CHEBI:15354 (5)
CHEBI:17256 (4)
CHEBI:17768 (4)
CHEBI:17822 (4)
CHEBI:26271 (4)
CHEBI:15356 (4)
CHEBI:22660 (4)
CHEBI:27570 (4)
CHEBI:18186 (4)
CHEBI:26986 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:28300 (4)
CHEBI:15676 (4)
CHEBI:17748 (4)
CHEBI:24898 (4)
CHEBI:25017 (4)
CHEBI:16610 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:29016 (4)
CHEBI:16704 (4)
CHEBI:18257 (4)
CHEBI:18237 (4)
CHEBI:16040 (4)
CHEBI:17015 (4)
CHEBI:78320 (4)

Metabolite Name

N6-acetyllysine (3)
2-hydroxyglutarate (3)
2-aminoadipate (3)
Spermidine (3)
Betaine (3)
Choline (3)
Hypoxanthine (3)
Trehalose 6-phosphate (2)
Lysylleucine (2)
Glutaminylleucine (2)
3-deoxyoctulosonate (2)
Valylglutamine (2)
1-methyladenine (2)
Ribulose/xylulose (2)
Phenylalanylglycine (2)
Leucylglycine (2)
Isoleucylglycine (2)
UDP-N-acetylglucosamine/galactosamine (2)
Sedoheptulose (2)
Alanylleucine (2)
Sedoheptulose-7-phosphate (2)
Glycylleucine (2)
Glutamate, gamma-methyl ester (2)
Allo-threonine (2)
N-acetyl-glucosamine 1-phosphate (2)
Phytosphingosine (2)
2'-deoxyguanosine (2)
2'-deoxyadenosine (2)
Pyroglutamine* (2)
Glycerophosphoserine* (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (14)
Comparative genomic hybridization by array (5)
Proteomic profiling by array (4)
Unknown experiment type (3)
ChIP-seq (3)
High-throughput sequencing (2)
Genotyping by array (2)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (467)
2021 (415)
2023 (364)
2024 (351)
2020 (348)
2025 (344)
2019 (273)
2018 (263)
2015 (228)
2017 (194)
2016 (191)
2013 (142)
2014 (139)
2012 (127)
2011 (114)
2010 (101)
2009 (66)
2026 (43)
2008 (40)
2007 (26)
2006 (12)
2005 (11)
2003 (6)
2004 (5)
2002 (3)
2001 (3)
1998 (2)

Lab affiliation

Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Department of Medicine, Nephrology and Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (2)
ETH Zurich Institute of Molecular Systems Biology (2)
Institute for Systems Biology, Seattle, WA, USA (2)
Institute of Molecular Systems Biology ETH Zurich (2)
University of Missouri-Columbia (2)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, UK, LS2 9JT (1)
Barts Cancer Institute (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Research UK Scotland Institute (Formerly the Cancer Research UK Beatson Institute) Garscube Estate Switchback Road Bearsden Glasgow, G61 1BD (1)
Cardiac Proteomics & Systems Biology Group, Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen (1)
Cell and Developmental Biology, School of Life Sciences, University of Dundee, DD1 4HN (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Centre for Tumor Biology, Barts Cancer Institute – a CR-UK Centre of Excellence, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ, United Kingdom (1)
Charite- Universitaetsmedizin Berlin, 10117 Berlin, Germany (1)
Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Department of Biochemistry and Microbiology, Institute of Biology; Warsaw University of Life Sciences-SGGW (1)
Department of Biochemistry and Microbiology, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA. (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, 8093, Switzerland (1)
Department of Infection Biology Institute of Infection and Global Health University of Liverpool (1)
Department of Medicine, Department of Pathology, Microbiology and Immunology Vanderbilt University School of Medicine; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Department of Pathology and Cancer Center, Stony Brook University, Stony Brook, NY 11794 (1)
Department of Pediatrics, Center for Vaccine Development and Global Health, University of Maryland School of Medicine, Baltimore, Maryland, USA (1)
Director of Women’s Health Research Women’s Service Line Inova Health System (1)
Division of Cancer Sciences, University of Manchester, School of Medical Sciences, Faculty of Biology, Medicine and Health, 5th Floor Research, St Mary’s Hospital, Oxford Road, Manchester M13 9PL. (1)

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Transcription profiling of mouse liver regeneration in Socs3 h-KO mice, Socs3 fl/fl, Alb-Cre- littermates controls

Suppressor of cytokine signaling 3 (SOCS3) down-regulates several signaling pathways in multiple cell types, and previous data suggest that SOCS3 may shut off cytokine activation at the early stages of liver regeneration. We developed hepatocyte-specific Socs3 knockout (Socs3 h-KO) mice to directly ...

ORGANISM(S): Mus musculus

2008-06-16 | E-GEOD-9549 | biostudies-arrayexpress

Deciphering the metabolic perturbation in hepatic alveolar echinococcosis: a 1H NMR-based metabolomics study

BACKGROUND: Hepatic alveolar echinococcosis (HAE) is caused by the growth of Echinococcus multilocularis larvae in the liver. It is a chronic and potentially lethal parasitic disease. Early stage diagnosis for this disease is currently not available due to its long asymptomatic ...

2021-08-03 | MTBLS981 | MetaboLights

H. salinarum transcriptome dynamics in response to 0.85mM extracellular copper

Halobacterium salinarum is a halophillic archea that is capable of sustaining growth despite dramatic changes to the concentration of ions in its extracellular environment. Here we studied H. salinarum's specific adaptation response to the transition metal copper. Analysis utilized pre-treatment (t...

ORGANISM(S): Halobacterium sp. NRC-1

2012-06-29 | E-GEOD-39028 | biostudies-arrayexpress

The Japanese version of the Richards-Campbell Sleep Questionnaire: Reliability and validity assessment.

Not available

S-EPMC6650758 | biostudies-literature

PROTOCOL: The effectiveness of wilderness therapy and adventure learning in reducing anti‐social and offending behaviour in children and young people at risk of offending

Not available

S-EPMC9428765 | biostudies-literature

PROTOCOL: Effectiveness of economic development interventions in humanitarian settings in low- and middle-income countries: A mixed-method systematic review.

Not available

S-EPMC10585609 | biostudies-literature

Photoinduced Pd-Catalyzed Direct Sulfonylation of Allylic C-H Bonds.

Not available

S-EPMC12503507 | biostudies-literature

PROTOCOL: Gender transformative approaches in agriculture for women's empowerment: A systematic review

Not available

S-EPMC9270661 | biostudies-literature

Molecular mechanism of proton transport in CLC Cl-/H+ exchange transporters.

Not available

S-EPMC3406864 | biostudies-literature

Metabolomics analysis highlights Yashtimadhu (Glycyrrhiza glabra L.) mediated neuroprotection in a rotenone-induced cellular model of Parkinsons disease

In the present study we carried out global and targeted metabolomics of differentiated IMR32 cells to study the neuroprotective mechanism of Yashtimadhu (Glycyrrhiza glabra L.) in rotenone induced cellular model of parkinsons disease. Our mass spectrometry data highlighted 2403 and 2934 aligned met...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-08-31 | MSV000088036 | MassIVE

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4434 Results

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BACKGROUND: Hepatic alveolar echinococcosis (HAE) is caused by the growth of Echinococcus multilocularis larvae in the liver. It is a chronic and potentially lethal parasitic disease. Early stage diagnosis for this disease is currently not available due to its long asymptomatic ...

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