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GenomicsThe response regulator ArcA uses a diverse binding site architechture to globally regulate carbon oxidation in E. coli [ChIP-Seq]
We found many binding sites for ArcA under glucose fermentative anaerobic growth conditions. Descirbed in the manuscript "The response regulator ArcA uses a diverse binding site architechture to globally regulate carbon oxidation in E. coli" Examination of occupancy of ArcA under anaerobi...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2013-10-17 | E-GEOD-46414 | biostudies-arrayexpress
TranscriptomicsArcA Chip-chip from Escherichia coli MG1655 K-12, WT and M-bM-^HM-^FarcA strains
Mapping the occupancy of ArcA throughout the genome of Escherchia coli MG1655 K-12 using an affinity purified antibody under anaerobic and aerobic growth conditions. As a control, we also performed ChIP-chip onArcA in a M-bM-^HM-^FarcA mutant strain of Escherchia coli MG1655 K-12. Described in the m...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2013-10-17 | E-GEOD-46413 | biostudies-arrayexpress
TranscriptomicsDifferentiation of mesenchymal stem cells into adipocytes.
Differentiation of mesenchymal stem cells into adipocytes was studied. Control (undifferentiated) stem cells were compared to induced (3 days of induction) cells. In addition, two RNA fractions are studied: RNA associated to polysomes and total RNA.
ORGANISM(S): Homo sapiens 
2013-07-10 | E-MTAB-1366 | biostudies-arrayexpress
TranscriptomicsChip-chip from Escherichia coli MG1655 K-12, WT and M-bM-^HM-^Ffnr strains
Mapping the occupancy of FNR, HNS, and IHF throughout the genome of Escherchia coli MG1655 K-12 using an affinity purified antibody under anerobic growth conditions. We also mapped the binding of the M-CM-^_ subunit of RNA Polymerase under both aerobic and anaerobic growth conditions. As a control, ...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2013-06-20 | E-GEOD-41186 | biostudies-arrayexpress
GenomicsGenome-wide analysis of FNR and M-OM-^C70 in E. coli under aerobic and anaerobic growth conditions.
We found many binding sites for FNR under glucose fermentative anaerobic growth conditions. Also, many binding sites were identified for M-OM-^C70 under both aerobic and anaerobic growthin conditions. Descirbed in the manuscript "Genome-scale Analysis of E. coli FNR Reveals the Complexity of B...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2013-06-20 | E-GEOD-41187 | biostudies-arrayexpress
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