Cape H H - OmicsDI

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Unknown (2973)
Transcriptomics (42)
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Homo sapiens (20)
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Rattus norvegicus (6)
Arabidopsis thaliana (5)
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Mycolicibacterium smegmatis MC2 155 (3)
Bathyergus suillus (2)
Petrolisthes cinctipes (2)
Cryptomys hottentotus hottentotus (1)
Methanopyrus kandleri AV19 (1)
Caragana korshinskii (1)
Xerophyta humilis (1)
Populus x canadensis (1)
Bombyx mori (1)
Bos taurus (1)
Mycobacterium tuberculosis H37Rv (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Naja nivea (1)
Bacteria (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Mycobacterium tuberculosis (1)
Mycobacterium tuberculosis H37Ra (1)
Vigna unguiculata subsp. unguiculata (1)

Organisms

Rattus norvegicus (2)
Arabidopsis thaliana (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (43)
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Tissue

Cell culture (3)
Colon (2)
Permanent cell line cell (2)
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Leaf (1)
Plant cell (1)
Prokaryotic cell (1)
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Disease

Colon cancer (2)
Tuberculosis (2)
Prostate carcinoma (1)
Cervix carcinoma (1)
Esophageal cancer (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (13)
Shotgun proteomics (11)
Mass spectrometry (3)
Data-independent acquisition (1)
MSE (1)

Instrument Platform

Q Exactive (4)
Pacbio Revio (1)
DNBSEQ-G400 FAST (1)
PromethION (1)
NA (1)
N/A (1)
Illumina NovaSeq 6000 (1)
6560 Q-TOF LC/MS (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2015 (7)
2010 (7)
2008 (6)
2013 (5)
2009 (5)
2021 (5)
2018 (5)
2026 (4)
2022 (4)
2016 (4)
2012 (3)
2025 (3)
2023 (3)
2019 (3)
2014 (2)
2024 (1)
2007 (1)
2006 (1)
2020 (1)

CHEBI ID

CHEBI:1230 (1)
CHEBI:134344 (1)
CHEBI:14314 (1)
CHEBI:14336 (1)
CHEBI:143769 (1)
CHEBI:143770 (1)
CHEBI:15428 (1)
CHEBI:15584 (1)
CHEBI:15603 (1)
CHEBI:15674 (1)
CHEBI:15676 (1)
CHEBI:15699 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15781 (1)
CHEBI:15940 (1)
CHEBI:16000 (1)
CHEBI:16002 (1)
CHEBI:16011 (1)
CHEBI:16015 (1)
CHEBI:16024 (1)
CHEBI:16070 (1)
CHEBI:16109 (1)
CHEBI:16125 (1)
CHEBI:16196 (1)
CHEBI:16199 (1)
CHEBI:16217 (1)
CHEBI:16414 (1)
CHEBI:16540 (1)
CHEBI:16551 (1)

Metabolite Name

1,3-propanediol (1)
1,5-anhydro-D-sorbitol (1)
1,6-anhydro-glucose (1)
1-decanol (decyl alcohol) (1)
1-hexadecanol (1)
2,3-butanediol 1 (1)
2,3-butanediol 2 (1)
2-ethyl-1-hexanol (1)
2-hydroxypyridine (1)
3,5-dimethoxy-4-hydroxycinnamic acid (1)
3-(methylthio)-propylamine (1)
3-hydroxy-3-methylglutaric acid (1)
3-indoleacetonitrile (1)
4-hydroxybenzoic acid (1)
4-hydroxypyridine (1)
5,10,15,20-tetra(4-pyridyl)-21H,23H-porphine (1)
Beta- alanine 1 (1)
D-(+)-altrose 1 (1)
D-(+)-trehalose (1)
D-glucose 1 (1)
D-glucose-6-phosphate 1 (1)
D-lyxose 2 (1)
D-malic acid (1)
D-mannose 1 (1)
D-saccharic acid (1)
D-sorbitol (1)
D-threitol (1)
DL-isoleucine 1 (1)
L- sorbose 2 (1)
L-alanine 1 (1)

First Public Date

2014 (3)
2026 (2)
2025 (2)
2024 (1)
2023 (1)
2020 (1)
2019 (1)

Study type

Transcription profiling by array (25)
RNA-seq of non coding RNA (6)
RNA-seq of coding RNA (4)
DNA-seq (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
Methylation profiling by array (1)

Release Date

2022 (412)
2021 (344)
2023 (333)
2025 (328)
2024 (292)
2020 (272)
2019 (188)
2018 (167)
2017 (121)
2015 (105)
2016 (93)
2014 (77)
2026 (60)
2013 (45)
2011 (41)
2012 (33)
2010 (33)
2009 (20)
2008 (17)
2007 (10)
2006 (7)
2001 (5)
2003 (4)
2004 (3)
2002 (3)
2005 (1)
2000 (1)
1998 (1)

Lab affiliation

1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, University of Cape Town, South Africa (1)
DST/NRF Centre of Excellence for Biomedical Tuberculosis Research/South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa (1)
Department of Biology, Plant ecophysiology lab, ADepartment of Biological Sciences, University of Cape Town, Private Bag X3, Rondebosch 7701, South Africa (1)
Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa, 7925 (1)
Deputy of the Department of Biophysical Chemistry Head of Space Biochemistry Group Elisa Richter Fellow Representative of Austria and Executive Council Member of the European Astrobiological Network EANA (1)
Division of Chemical and Systems Biology, Department of Integrative Biomedical Science, Institute for Infectious Disease and Molecular Medicine, Faculty of Health Science, University of Cape Town, South Africa. (1)
Division of Medical Virology, Department of Pathology (1)
Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa (1)
SAMRC Gynaecology Cancer Research Centre, University of Cape Town, South Africa (1)
Sharjah Institute for Medical Research & Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates (1)
South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, South Africa (1)
South African National Bioinformatics Institute, University of the Western Cape, South Africa (1)

Tags

xref:PubMed:32445454 (1)
xref:PubMed:20360939 (1)
xref:PubMed:17913887 (1)
xref:PubMed:39267452 (1)
xref:EuropePMC:PMC12906165 (1)

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Blueremediomics / DIPLOMICS - H. perlevis metagenome from South Africa

Metagenome of H. perlevis from Kalkbay South Africa

PRJEB89034 | ENA

Gene expression profiling of hepatocarcinogenesis initiation in Fischer-344 rats.

Diethylnitrosamine is used as initiator carcinogen in the modiffied resistan model but is not known its effect on gene expression profile on this stage. In other way, CAPE is compound with anticarcinogenic propertie when is administered 12 h before DEN and with the aim to characterize its effect on ...

ORGANISM(S): Rattus norvegicus

2009-06-30 | E-GEOD-12030 | biostudies-arrayexpress

Transcriptional profiling of PC-3 human prostate cancer cells in response to caffeic acid phenethyl ester treatment

PC-3 prostate cancer cells were treated with caffeic acid phenethyl ester (CAPE) or vehicle control for 24 h and 72 h for transcription microarray analysis.

ORGANISM(S): Homo sapiens

2012-08-22 | E-MTAB-773 | biostudies-arrayexpress

Pacbio Hifi sequencing of a male cape dune mole-rat kidney sample

One PacBio Hifi sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample ...

ORGANISM(S): Bathyergus suillus

2026-08-05 | E-MTAB-17312 | biostudies-arrayexpress

ONT ULK sequencing of a male cape dune mole-rat kidney sample

One ONT-ULK sequencing run from the kidney of a single male CDMR (Bathyergus suillus) sample used to make the mBatSui1.1.primary genome assembly as an evolutionary comparator to our telomere-to-telomere naked mole-rat genome assembly. Specifically, we assembled a CDMR from a wild-derived sample in S...

ORGANISM(S): Bathyergus suillus

2026-08-05 | E-MTAB-17420 | biostudies-arrayexpress

SARS-CoV-2 seroepidemiology in Cape Town, South Africa, and implications for future outbreaks in low-income communities.

Not available

S-EPMC11302865 | biostudies-literature

Factors that influence Cape fur seal predation on Cape gannets at Lambert's Bay, South Africa.

Not available

S-EPMC9202551 | biostudies-literature

Molecular Characterization of the 16S rRNA Gene of Helicobacter fennelliae Isolated from Stools and Blood Cultures from Paediatric Patients in South Africa.

Not available

S-EPMC3335488 | biostudies-literature

Metagenome of H. perlevis from Kalkbay South Africa