Carbon starvation

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Corynebacterium glutamicum ATCC 13032 (2)
Mycolicibacterium smegmatis MC2 155 (2)
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Pseudomonas aeruginosa (2)
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Mass Spectrometry (43)
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2011 (39)
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CHEBI ID

CHEBI:18050 (3)
CHEBI:16264 (3)
CHEBI:17203 (3)
CHEBI:17196 (3)
CHEBI:16467 (3)
CHEBI:17053 (3)
CHEBI:17895 (3)
CHEBI:17295 (3)
CHEBI:16349 (2)
CHEBI:28044 (2)
CHEBI:17242 (2)
CHEBI:16857 (2)
CHEBI:18066 (2)
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CHEBI:15741 (2)
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CHEBI:15940 (2)
CHEBI:16027 (2)
CHEBI:16680 (2)
CHEBI:16828 (2)
CHEBI:91064 (1)
CHEBI:91068 (1)
CHEBI:91067 (1)
CHEBI:91066 (1)
CHEBI:91074 (1)
CHEBI:72368 (1)
CHEBI:91071 (1)

Metabolite Name

S-adenosyl-L-homocysteine (2)
L-citrulline (2)
L-aspartic acid (2)
L-asparagine (2)
L-glutamic acid (2)
L-glutamine (2)
L-proline (2)
L-histidine (2)
L-lysine (2)
L-arginine (2)
Betaine homarine (1)
DG 40:10 (IS) (1)
DG 40:8 (IS) (1)
DG 40:4 (IS) (1)
DG 40:0 (IS) (1)
DG 38:0 (IS) (1)
DG 34:0 (IS) (1)
DG 32:0 (IS) (1)
DG 30:0 (IS) (1)
DG 28:0 (IS) (1)
DG 34:5 (1)
N-methylnicotinate (1)
S,S-dimethyl-beta-propiothetin (1)
PS(18:1/22:4) (1)
PS(18:0/20:3) (1)
PS(18:0/16:1) (1)
PS(16:0/22:5) (1)
PS(16:0/18:1) (1)
PS(16:0/16:1) (1)
PI(18:1/20:4) (1)

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2019 (8)
2018 (7)
2016 (3)
2013 (2)
2010 (1)

Classification

bacteria (27)
fungi (16)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (152)
RNA-seq of coding RNA (29)
Unknown experiment type (8)
ChIP-seq (6)
ChIP-chip by tiling array (3)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
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Other (3)
Animal - High-throughput sequencing (2)
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High-throughput sequencing (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
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2015 (54)
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2014 (53)
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2005 (8)
2004 (4)
2000 (4)
2001 (3)
1999 (2)
1998 (2)
2002 (1)

Lab affiliation

School of Biological Sciences, Victoria University of Wellington, New Zealand (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, 85354 Freising, Germany (1)
Bioengineering, Protein Chemistry & Enzyme Technology, Technical Univesity of Denmark (DTU), Denmark (1)
Biology department, Washington Univeristy in St. Louis (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
Boston College, Chemistry (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, 6 Novohradská 237, Třeboň, 379 81, Czech Republic (1)
Core Facility Proteome Analysis, Rostock University Medical Center, Rostock, Germany (1)
Departamento de Bioquímica e Biologia Molecular, UFPR, Curitiba, PR, Brazil (1)
Department of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, USA (1)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (1)
Department of Biology New York University New York NY (1)
Department of Infectious Disease, Imperial College London (1)
Department of Pediatric Hematology and Oncology, Charité - Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany (1)
Department of Plant Physiology, Faculty of Biology, Adam Mickiewicz University, Poznań, Poland (1)
Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD (1)
EDyP (1)
Genetics and Experimental Bioinformatics, Faculty of Biology, Freiburg University, D-79104 Freiburg, Germany (1)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (1)
Gregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, Vienna, Austria. (1)
Helmholtz Centre for Environmental Research GmbH - UFDZDepartment of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Institut Gustave Roussy (1)
Institut für Mikrobiologie Dept. Mikrobielle Proteomik Universität Greifswald Felix-Hausdorff-Str. 8 17489 Greifswald (1)
Institute for Microbiology Department of Microbial Proteomics Ernst-Moritz-Arndt-University Greifswald F.-L.-Jahn-Str. 15 17489 Greifswald phone: +49 3834 864073 fax: +49 3834 864202 (1)
Institute of Biochemistry and Biophysics, PAS Pawinskiego 5a, 02-106 Warsaw (1)
Institute of Bioinformatics, Bangalore, Karnataka, India (1)
Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-US Avda Americo Vespucio 49, 41092-Sevilla, Spain (1)
MPL/BMFZ, HHU Duesseldorf (1)
Metabolic Networks (1)

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Carbon starvation enhances microbiologically influenced corrosion in marine offshore infrastructures

an exploratory mechanistic Q17 A study to investigate how carbon availability influences microbial community structure and corrosion behavior in multispecies biofilms relevant to offshore infrastructure. Sediment from the North Sea was used as inoculum, and steel coupons were exposed under blank (no...

2026-09-16 | MTBLS15254 | MetaboLights

The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

Fungi are an important source of enzymes for saccharification of plant polysaccharides and production of biofuels. Understanding of the regulation and induction of expression of genes encoding these enzymes is still incomplete. To explore the induction mechanism, we analysed the response of the indu...

ORGANISM(S): Aspergillus niger

2014-08-22 | E-GEOD-57315 | biostudies-arrayexpress

Response of Lactococcus lactis to isoleucine starvation

For the first time in Lactococcus lactis, amino acid starvation response was characterized. The natural imposition of isoleucine starvation, by its consumption during growth, associated to transcript profiling, allowed defining exhaustively this stress stimulon. It consisted of a general induction o...

ORGANISM(S): Lactococcus lactis

2010-06-25 | E-GEOD-4872 | biostudies-arrayexpress

Lactococcus lactis response to isoleucine starvation

Amino acid assimilation and metabolism are crucial for bacterial growth and survival and this is particularly obvious for lactic acid bacteria (LAB) that are generally auxotroph for various amino acids. However, amino acid assimilation is poorly characterized and a complete description of the respon...

ORGANISM(S): Lactococcus lactis

2011-09-21 | E-GEOD-12962 | biostudies-arrayexpress

The effect of carbon starvation on the Escherichia coli SLE1 proteome.

The project aims at elucidating the effects of carbon starvation on the qualitative and quantitative composition of the Escherichia coli HT115-derived SLE1 strain proteome as determined by the combination of label-free and metabolic labeling-based proteomics.

ORGANISM(S): Escherichia coli HT115 Escherichia coli

2019-11-08 | PXD003255 | Pride

Transposon insertion sequencing (Tn-Seq) to identify fitness determinants during nitrogen starvation, carbon starvation, and transitions between them in Pseudomonas aeruginosa

We performed Tn-Seq to identify genetic fitness determinants for starvation survival in Pseudomonas aeruginosa. A pooled mutant library of approximately 180,000 randomly inserted transposon mutants was grown into stationary phase in rich medium (lysogeny broth) and an aliquot of this mutant pool was...

ORGANISM(S): Pseudomonas aeruginosa

2026-03-04 | E-MTAB-15727 | biostudies-arrayexpress

The carbon starvation response of Aspergillus niger during submerged cultivation

Filamentous fungi are confronted with changes and limitations of their carbon source during growth in their natural habitats and during industrial applications. To survive life-threatening starvation conditions, carbon from extra- and intracellular resources becomes mobilized to fuel fungal self-pro...

ORGANISM(S): Aspergillus niger

2012-08-12 | E-GEOD-39559 | biostudies-arrayexpress

Expression data from Caulobacter crescentus starved for carbon

Bacteria adapt to shifts from rapid to slow growth, and have developed strategies for long-term survival during prolonged starvation and stress conditions. We report the response of C. crescentus to carbon starvation, a common form of nutritional stress encountered by free-living bacteria, that indu...

ORGANISM(S): Caulobacter vibrioides

2011-04-20 | E-GEOD-25996 | biostudies-arrayexpress

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [gene expression data]

Inorganic phosphate is an essential nutrient required by organisms for growth. During phosphate starvation, Saccharomyces cerevisiae activates the phosphate signal transduction (PHO) pathway leading to the expression of the secreted acid phosphatase, PHO5. The fission yeast, Schizosaccharomyces pomb...

ORGANISM(S): Schizosaccharomyces pombe 972h-

2013-01-02 | E-GEOD-39478 | biostudies-arrayexpress

Expression data from Caulobacter crescentus (syn. C. vibrioides) swarmer and stalked cells starved for carbon

Bacteria adapt to shifts from rapid to slow growth, and have developed strategies for long-term survival during prolonged starvation and stress conditions. We report the response of specific developmental stages of C. crescentus -swarmer and stalked cells- to carbon starvation, a common form of nutr...

ORGANISM(S): Caulobacter vibrioides

2011-04-20 | E-GEOD-25997 | biostudies-arrayexpress

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