Carcinoma-associated fibroblast

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Transcriptomics (1175)
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Organisms

Homo sapiens (55)
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Tissue

Fibroblast (11)
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Mass Spectrometry (16)
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Illumina HiSeq 2000 (1)
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Instrument Platform

Illumina NovaSeq 6000 (21)
Illumina HiSeq 2500 (17)
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NA (2)
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DNBSEQ-G400 (2)
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NextSeq 550 (Illumina). (1)
Qiagen RNEasy Mini ki (1)
BD FACSAriaIIu cell sorter (1)
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IEO HPC (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
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BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Cutadapt, STAR (1)
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BD InFlux Cytometer (Becton-Dickinson) (1)
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Axon Instruments GenePix 4000B scanner (1)
Solexa 2G Genome Analyzer (1)
IScan Illumina (1)

Publication Date

2010 (164)
2015 (162)
2013 (142)
2011 (141)
2014 (138)
2012 (136)
2016 (65)
2008 (57)
2009 (54)
2026 (26)
2007 (26)
2021 (25)
2023 (22)
2025 (21)
2019 (19)
2024 (18)
2022 (18)
2020 (16)
2018 (14)
2005 (11)
2006 (8)
2017 (7)
2004 (2)

CHEBI ID

CHEBI:6650 (3)
CHEBI:17234 (3)
CHEBI:27266 (3)
CHEBI:25017 (3)
CHEBI:24898 (3)
CHEBI:26271 (3)
CHEBI:27570 (3)
CHEBI:28300 (3)
CHEBI:16449 (3)
CHEBI:25094 (3)
CHEBI:22653 (3)
CHEBI:26986 (3)
CHEBI:22660 (3)
CHEBI:18186 (3)
CHEBI:17822 (3)
CHEBI:30915 (3)
CHEBI:28044 (3)
CHEBI:18237 (3)
CHEBI:29016 (3)
CHEBI:16811 (3)
CHEBI:15741 (3)
CHEBI:15428 (3)
CHEBI:27897 (3)
CHEBI:16135 (2)
CHEBI:30887 (2)
CHEBI:16908 (2)
CHEBI:15366 (2)
CHEBI:15846 (2)
CHEBI:17754 (2)
CHEBI:78320 (2)

Metabolite Name

Ornithine (4)
Arginine (4)
Lysine (4)
Tyrosine (4)
Serine (4)
Threonine (4)
Glutamine (4)
Glucose (4)
Histidine (3)
Leucine (3)
Valine (3)
Alanine (3)
AMP (3)
Glycine (3)
Citrulline (3)
Methionine (3)
Tryptophan (3)
Lactate (3)
Sarcosine (3)
Proline (3)
Phenylalanine (3)
Isoleucine (3)
Creatine (3)
Asparagine (3)
TUDCA (2)
HDCA (2)
AMCA (2)
TDCA (2)
TCA (2)
DPAn-6 (2)

First Public Date

2026 (16)
2019 (11)
2025 (9)
2024 (9)
2023 (9)
2020 (7)
2014 (7)
2021 (5)
2022 (3)
2013 (3)
2016 (1)

Study type

Transcription profiling by array (837)
RNA-seq of coding RNA (102)
ChIP-seq (31)
Comparative genomic hybridization by array (25)
Methylation profiling by array (25)
RNA-seq of coding RNA from single cells (22)
Unknown experiment type (19)
Proteomic profiling by array (14)
RNA-seq of non coding RNA (14)
ChIP-chip by tiling array (13)
Other (13)
Genotyping by array (11)
Transcription profiling by RT-PCR (9)
Transcription profiling by SAGE (5)
Methylation profiling by high throughput sequencing (4)
Human - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
ChIP-chip by array (3)
MicroRNA profiling by high throughput sequencing (3)
RNA-seq of total RNA (3)
Spatial transcriptomics by high-throughput sequencing (2)
ATAC-seq (2)
DNA-seq (2)
Cell line - Single-cell sequencing (1)
High-throughput sequencing (1)
MicroRNA profiling by array (1)

Release Date

2015 (182)
2010 (168)
2013 (145)
2011 (145)
2014 (144)
2012 (142)
2016 (82)
2022 (80)
2021 (68)
2025 (63)
2023 (59)
2008 (59)
2009 (56)
2024 (53)
2018 (39)
2020 (35)
2019 (33)
2017 (28)
2007 (28)
2026 (18)
2005 (12)
2006 (9)
2004 (2)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (7)
Lab Head Proteomics Unit - CNIC - Madrid, Spain (1)
National Institute of Gastroenterology, IRCCS "S. De Bellis" Research Hospital, Castellana Grotte, 70013 Bari, Italy (1)
Professor of Biological Chemistry, Oncology and Pathology, Johns Hopkins University (1)
Proteome Research (AG Stühler) Institute of Molecular Medicine I Heinrich Heine University Düsseldorf Universitätsstraße 40225 Düsseldorf Germany (1)
Cellular and Molecular Immunology Research Unit (CMIRU), Faculty of Allied Health Sciences, Naresuan University, Phitsanulok, Thailand (1)
Max Planck Institute of Biochemistry Department of Proteomics and Signaltransduction Am Klopferspitz 18 D-82152 Martinsried (1)
Department of Life Technologies, University of Turku, Turku, Finland (1)
Max Planck Institute of Biochemistry (1)
Tranlational Oncology Group, Center for Tumor Biology and Immunology, Philipps University, Marburg, Germany (1)

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Transcription profiling of human mesenchymal stem cells reveals carcinoma associated fibroblast like differentiation

Carcinoma associated fibroblasts (CAFs) have recently been implicated in important aspects of epithelial solid tumor biology such as neoplastic progression, tumor growth, angiogenesis, and metastasis. However, neither the source of CAFs nor the differences between CAFs and fibroblasts from non-neopl...

ORGANISM(S): Homo sapiens

2008-10-20 | E-GEOD-9764 | biostudies-arrayexpress

Carcinoma-associated fibroblasts’ transcriptomic program predicts clinical outcome in stage II/III colorectal cancer

We obtained fibroblast cultures from fresh surgical specimen ressected from patients with primary colorectal carcinoma: normal colonic fibroblasts (NCF=9) from the normal colonic mucosa at least 5-10cm from the surgical margin, carcinoma-associated fibroblasts from the primary tumor (CAF-PT=14) and ...

ORGANISM(S): Homo sapiens

2013-05-10 | E-GEOD-46824 | biostudies-arrayexpress

Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts - ZR-75-1 breast cancer cells

Breast cancer is still the most common type of cancer in women; an important role in carcinogenesis is actually attributed to cancer-associated fibroblasts. In this study we investigated whether it is possible to assess the functional state of cancer-associated fibroblasts through tumor tissue prote...