Carl Simon S - OmicsDI

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Unknown (89)
Transcriptomics (9)
Genomics (9)
Metabolomics (2)

Organisms

Homo sapiens (13)
Mus musculus (5)

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biostudies-arrayexpress (9)
EGA (9)
MetaboLights (2)

Technology Type

Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
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CHEBI ID

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Metabolite Name

Adenine (2)
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(+)-dethiobiotin (1)
(+)-hydrobenzoin (1)
(+/-)-6-Hydroxy-3-oxo-alpha-ionol (1)
(+/-)-Eucalyptol (1)
(+/-)-Metanephrine (1)
(-)-Sativan (1)
(-)-Shikimic acid (1)
(-)-Usnicacid (1)
(2E)-2-[(Methylsulfanyl)methyl]-2-butenal (1)
(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran (1)
(2S)-2-[(4-Aminobenzoyl)amino]pentanedioate (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(5E)-7-methylidene-10-oxo-4-(propan-2-yl)undec-5-enoic acid (1)
(E)-2-nonenal (1)
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Study type

RNA-seq of coding RNA (5)
Transcription profiling by array (2)
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RNA-seq of coding RNA from single cells (1)

Release Date

2022 (16)
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2011 (3)
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2010 (1)

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Horizontal Transfer of Bacteriocin Biosynthesis Genes Requires Metabolic Adaptation To Improve Compound Production and Cellular Fitness

Biosynthetic gene clusters (BGCs) encoding the production of bacteriocins are widespread among bacterial isolates and are important genetic determinants of competitive fitness within a given habitat. Staphylococci produce a tremendous diversity of compounds, and the corresponding BGCs are frequen...

2022-11-09 | MTBLS5196 | MetaboLights

Human Bone Marrow Stromal Cells cultured on polymer scaffolds with varied properties

Microarray analysis was used to evaluate expression differences from a single donor human bone marrow stromal cells (hBMSCs) as a function of varied polymer-based tissue engineering scaffolds. The results revealed that gene expression patterns of hBMSCs grouped according to scaffold. A library of sc...

ORGANISM(S): Homo sapiens

2013-11-01 | E-GEOD-50743 | biostudies-arrayexpress

Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster.

Not available

S-EPMC10675870 | biostudies-literature

Vitamin B₁₂ is not shared by all marine prototrophic bacteria with their environment.

Not available

S-EPMC10203341 | biostudies-literature

Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.

Not available

S-EPMC4540966 | biostudies-literature

Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome.