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TranscriptomicsRNA Subcellular CAGE Localization from ENCODE/RIKEN
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Piero Carninci mailto:carninci@riken.jp). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track show...
ORGANISM(S): Homo sapiens 
2011-12-16 | E-GEOD-34448 | biostudies-arrayexpress
TranscriptomicsPromoter activity profiling throughout the Drosophila life cycle reveals role of transposons in regulatory innovation
Since their discovery, transposable elements have been proposed to play a central role in the evolution of their host genomes through their ability to regulate gene expression, in particular by providing transcription start sites (TSSs) for host genes. To investigate their contribution to developmen...
ORGANISM(S): Drosophila melanogaster 
2012-08-30 | E-GEOD-36212 | biostudies-arrayexpress
TranscriptomicsTranscriptome of hepatocellular carcinoma using CAGE
An increasing number of non-coding RNAs (ncRNAs) are implicated in various human diseases including cancer; however ncRNA transcriptome of hepatocellular carcinoma (HCC) remains largely unexplored. We use CAGE (Cap Analysis of Gene Expression) to comprehensively map transcription start sites (TSSs) ...
ORGANISM(S): Mus musculus 
2015-09-10 | E-GEOD-60982 | biostudies-arrayexpress
TranscriptomicsZebrafish (Danio rerio) catecholaminergic neuron RNA-seq based transcript profiles
This project aimed at identifying developmental stage specific transcript profiles for catecholaminergic neurons in embryos and early larvae of zebrafish (Danio rerio). Catecholaminergic neurons were labeled using transgenic zebrafish strains to drive expression of GFP. At stages 24, 36, 72 and 96 h...
ORGANISM(S): Danio rerio 
2012-10-15 | E-GEOD-41373 | biostudies-arrayexpress
TranscriptomicsMacrophage response to lipopolysaccharide
Temporal analysis of bone marrow derived macrophages after 10 ug/ml lipopolysaccharide stimulation. C57BL6, C3H/ARC, BalbC and C3H/HeJ mouse strains analyzed. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-3148 | biostudies-arrayexpress
TranscriptomicsAnalysis of pvalb-egfp cells from mouse visual cortex.
We provide an annotated cDNA clone collection which is particularly suitable for transcriptomic analysis in the mouse brain. Using it on microarrays, we compared the transcriptome of EGFP positive and negative cells in a parvalbumin-egfp transgenic background and showed that more than 30 % of clones...
ORGANISM(S): Mus musculus 
2008-08-22 | E-GEOD-8968 | biostudies-arrayexpress
TranscriptomicsBMM_C3H/ARC_LPS_timecourse
Bone marrow derived macrophages (BMM) total RNA from C3H/ARC mice extracted after stimulation by LPS at different time points. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was labeled with Cy3 and compared w...
ORGANISM(S): Mus musculus 
2010-06-05 | E-GEOD-324 | biostudies-arrayexpress
TranscriptomicsBMM_BalbC_LPS_timecourse
Bone marrow derived macrophages (BMM) total RNA from C3H/ARC mice extracted after stimulation by LPS at different time points. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was labeled with Cy3 and compared w...
ORGANISM(S): Mus musculus 
2003-03-27 | E-GEOD-325 | biostudies-arrayexpress
TranscriptomicsBMM_C3H/HeJ_LPS_timecourse
Bone marrow derived macrophages (BMM) total RNA from C3H/ARC mice extracted after stimulation by LPS at different time points. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was labeled with Cy3 and compared w...
ORGANISM(S): Mus musculus 
2010-06-05 | E-GEOD-326 | biostudies-arrayexpress
Genomicsena-DATASET-UNIGE-AL-25-11-2014-11:00:41:737-1967 - samples
Description not provided
EGAD00001001084 | EGA
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