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GenomicsTranscription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Philip Cayting mailto:pcayting@stanford.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track ...
ORGANISM(S): Mus musculus 
2012-04-11 | E-GEOD-36030 | biostudies-arrayexpress
GenomicsHistone Modifications by ChIP-seq from ENCODE/Stanford/Yale/Davis/Harvard
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Peggy Farnham mailto:pfarnham@usc.edu for questions concerning data collection and usage and Philip Cayting mailto:pcayting@stanford.edu for data scoring and submission inquiries). If...
ORGANISM(S): Homo sapiens 
2011-08-31 | E-GEOD-31755 | biostudies-arrayexpress
GenomicsENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Philip Cayting mailto:pcayting@stanford.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track ...
ORGANISM(S): Homo sapiens 
2011-08-30 | E-GEOD-31477 | biostudies-arrayexpress
GenomicsL3MBTL2 protein acts in concert with PcG protein mediated monoubiquitination of H2A to establish a repressive chromatin structure [ChIP-Seq data].
Human MBT domain-containing protein L3MBTL2 was found to be an integral component of a protein complex that we termed Polycomb Repressive Complex 1-like 3 (PRC1L3) given the presence of the PcG proteins RING1, RING2 and PCGF6. L3MBTL2 binds chromatin in a histone modification-independent manner and ...
ORGANISM(S): Homo sapiens 
2011-06-07 | E-GEOD-28162 | biostudies-arrayexpress
GenomicsHistone Modifications by ChIP-seq from ENCODE/Stanford/Yale
This track shows probable locations of the specified histone modifications in the given cell types as determined by chromatin immunoprecipitation followed by high throughput sequencing (ChIP-Seq). Each experiment is associated with an input signal, which represents the control condition where immuno...
ORGANISM(S): Mus musculus 
2011-09-20 | E-GEOD-32218 | biostudies-arrayexpress
GenomicsGenome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes
The orphan nuclear receptor TR4 (human testicular receptor 4 or NR2C2) plays a pivotal role in a variety of biological and metabolic processes. With no known ligand and few known target genes, the mode of TR4 function was unclear. We report the first genome-wide identification and characterization o...
ORGANISM(S): Homo sapiens 
2010-11-15 | E-GEOD-24685 | biostudies-arrayexpress
GenomicsZNF274 colocalizes with the histone methyltransferase SETDB1 at ZNF 3' ends.
Only a small percentage of human transcription factors (e.g. those associated with a specific differentiation program) are expressed in a given cell type. Thus, cell fate is mainly determined by cell type-specific silencing of transcription factors that drive different cellular lineages. Several hi...
ORGANISM(S): Homo sapiens 
2010-11-15 | E-GEOD-24632 | biostudies-arrayexpress
GenomicsFunctional analysis of Kap1 genomic recruitment
A current model for the genomic recruitment of Kap1 is via its interaction with KRAB domain-containing zinc finger transcription factors. We have performed ChIP-seq for various mutant KAP1 proteins and shown that this recruitment mechanism mediates binding of KAP1 only to the 3M-CM-"M-BM-^@M-BM-^Y e...
ORGANISM(S): Homo sapiens 
2011-05-24 | E-GEOD-27929 | biostudies-arrayexpress
GenomicsGenome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome.
Previous studies of E2F family members have suggested that protein-protein interactions may be the mechanism by which E2Fs are recruited to specific genomic regions. We have addressed this hypothesis on a genome-wide scale using ChIP-seq analysis of MCF7 cell lines that express tagged wildtype and m...
ORGANISM(S): Homo sapiens 
2011-04-04 | E-GEOD-28286 | biostudies-arrayexpress
TranscriptomicsRNA-seq from ENCODE/Stanford/Yale
The tracks show enrichment of RNA sequence tags mapped to the mouse genome generated by high throughput sequencing (RNA-Seq). Double stranded cDNA was synthesized from enriched RNA that was obtained after depletion of ribosomal RNA. Pieces of cDNA, 300-350 nucleotides in length, were PCR amplified, ...
ORGANISM(S): Mus musculus 
2012-07-24 | E-GEOD-39619 | biostudies-arrayexpress
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