Ccm - OmicsDI

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Unknown (1653)
Genomics (237)
Transcriptomics (147)
Proteomics (42)
Metabolomics (7)
Other (3)
Clinical (1)
Models (1)

Organisms

Homo sapiens (64)
Mus musculus (62)
Canis lupus familiaris (5)
Chlamydomonas reinhardtii (4)
Synechocystis sp. PCC 6803 (3)
Nannochloropsis oceanica (3)
Xenopus laevis (3)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Thalassiosira pseudonana (2)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Coxiella burnetii (1)
Thermoproteus tenax (1)
Methylorubrum extorquens (1)
Streptomyces coelicolor A3(2) (1)
mixed sample (1)
Escherichia coli (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Corynebacterium phage BFK20 (1)
Salmonella enterica subsp. enterica serovar Agona (1)
Hydrogenovibrio crunogenus (1)
Capillipedium parviflorum (1)
Arundinella pubescens (1)
Bothriochloa ischaemum (1)
Arundinella fluviatilis (1)
Arundinella anomala (1)
Imperata cylindrica (1)
Arundinella hirta (1)
Arundinella nepalensis (1)

Organisms

Homo sapiens (34)
Mus musculus (26)
Pseudomonas panipatensis (3)
Pseudomonas delhiensis (3)
Chlamydomonas reinhardtii (3)
Xenopus laevis (3)
Nannochloropsis oceanica (3)
Hymenobacter coccineus (2)
Corynebacterium marambiense (2)
Corynebacterium meridianum (2)
Corynebacterium mendelii (2)
Massilia antarctica (2)
Pseudoxanthomonas indica (2)
Novosphingobium mathurense (2)
Paenibacillus aquistagni (2)
Sphingopyxis indica (2)
Novosphingobium panipatense (2)
Streptomyces lavendulae subsp. lavendulae (2)
Sphingopyxis terrae subsp. ummariensis (2)
Rhizorhabdus histidinilytica (2)
Flavobacterium gelidicaeli (2)
Staphylococcus petrasii (2)
Synechocystis sp. PCC 6803 (2)
Flavobacterium cupreum (1)
Corynebacterium phage BFK20 (1)
Flavobacterium psychroterrae (1)
Hymenobacter lapidiphilus (1)
Hymenobacter amundsenii (1)
Staphylococcus pragensis (1)
Staphylococcus croceilyticus (1)

Repository

ENA (220)
biostudies-arrayexpress (96)
geo (70)
pride (38)
MetaboLights (5)
MassIVE (4)
GNPS (2)
FAIRDOMHub (1)
jPOST (1)

Tissue

Cell culture (9)
Epithelial cell (4)
Cell suspension culture (3)
Photosynthetic cell (3)
Bone marrow (2)
Stem cell (2)
Fibroblast (2)
Bacteroid (1)
Umbilical cord (1)
Coelomic fluid (1)
Endospore (1)
Embryonic fibroblast (1)
Keratinocyte (1)
Extracellular vesicle (1)
Cerebrospinal fluid (1)
Lymph node (1)
Plant cell (1)
Blood plasma (1)
HeLa cell (1)
Lung (1)
Kidney (1)
Liver (1)
T cell (1)
Blood (1)

Disease

Normal (4)
Breast cancer (2)
Idiopathic dilated cardiomyopathy (1)
Colon cancer metastatic (1)
Lemierre's syndrome (1)
Graft-versus-host disease (1)
Hepatocellular carcinoma (1)
Non-small cell lung carcinoma (1)
Osteosarcoma (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (38)
Shotgun proteomics (19)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Bottom-up proteomics (5)
Mass spectrometry (3)
SWATH MS (3)
Data-independent acquisition (3)
Mass spectrometry assay (2)
Gel-based experiment (2)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 2000 (5)
NextSeq 500 (3)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Impact (2)
Do not apply (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina HiSeq 1000 (1)
MinION (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
Exactive (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2015 (20)
2026 (19)
2022 (19)
2024 (16)
2025 (14)
2014 (12)
2010 (12)
2018 (12)
2012 (11)
2021 (10)
2023 (9)
2020 (9)
2019 (9)
2008 (9)
2016 (8)
2013 (7)
2017 (6)
2011 (5)
2007 (5)
2009 (2)
2005 (2)
2006 (1)

CHEBI ID

CHEBI:167209 (1)
CHEBI:166892 (1)
CHEBI:24406 (1)
CHEBI:189080 (1)
CHEBI:189079 (1)
CHEBI:32433 (1)
CHEBI:26250 (1)
CHEBI:189078 (1)
CHEBI:36946 (1)
CHEBI:24684 (1)
CHEBI:16284 (1)
CHEBI:137682 (1)
CHEBI:25307 (1)
CHEBI:86468 (1)
CHEBI:67236 (1)
CHEBI:67240 (1)
CHEBI:167212 (1)
CHEBI:12936 (1)
CHEBI:28862 (1)
CHEBI:28941 (1)
CHEBI:17327 (1)
CHEBI:133834 (1)
CHEBI:5100 (1)
CHEBI:44302 (1)
CHEBI:8654 (1)
CHEBI:90344 (1)
CHEBI:46756 (1)
CHEBI:26948 (1)
CHEBI:42111 (1)
CHEBI:22470 (1)

Metabolite Name

Fe-DTG 970b (1)
Fe-DTG 970a (1)
Co-DTG 940a (1)
2Ca-DTG 1118 (1)
Ca-DTG 1118b (1)
Ca-DTG 1118a (1)
Ca-DTG 1102b (1)
Ca-DTG 1102a (1)
Ca-DTG 956c (1)
Ca-DTG 956b (1)
Ca-DTG 956a (1)
Ca-DTG 810c (1)
Ca-DTG 810b (1)
Ca-DTG 810a (1)
Ca-DTG 794 (1)
Nicotianoside III (1)
DTG 815b (1)
DTG 648 (1)
GHGLb (1)
GHGLa (1)
RGHGL (1)
Aglycone (1)
Glyceryl glycoside (1)
Dihydroquinazoline (1)
Alpha-tocopherol (1)
Ergostene (1)
D-Trehalose (1)
ALA (1)
Prenol phosphate (1)
Dibenzoxepine (1)

First Public Date

2017 (33)
2020 (29)
2024 (23)
2019 (19)
2016 (19)
2025 (15)
2023 (15)
2022 (15)
2014 (13)
2026 (12)
2018 (11)
2021 (9)
2013 (5)
2015 (2)

Classification

bacteria (9)
fungi (1)
viruses (1)

Study status

Completed (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (21)
Unknown experiment type (3)
Methylation profiling by array (3)
Human - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
CLIP-Seq (1)
Other (1)
ChIP-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2022 (234)
2023 (227)
2025 (191)
2024 (187)
2021 (186)
2020 (125)
2019 (92)
2018 (77)
2017 (75)
2016 (68)
2015 (58)
2014 (39)
2026 (31)
2010 (28)
2013 (25)
2012 (23)
2008 (18)
2011 (17)
2009 (15)
2007 (13)
2005 (4)
2006 (4)
2004 (3)
2003 (3)
2002 (3)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (4)
Head of the Curie Institute Mass Spectrometry Platform (3)
Max-Planck-Institute of Biochemistry Research Group "Systems Biology of Membrane Trafficking" Munich, Germany (1)
The Czech Academy of Sciences, Institute of Microbiology, Vídeňská 1083, 142 20 Prague 4, Czech Republic (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI) (1)
Institute of Molecular Medicine and Cell Research, University Freiburg (1)
Department of Molecular Biology, Princeton University, Princeton, NJ, USA (1)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA. (1)
Masaryk University, Faculty of Science, Department of Biochemistry (1)
Department of Plant Sciences University of Oxford South Parks Road Oxford, OX1 3RB, UK (1)
Dipartimento di Medicina Veterinaria, Università degli Studi di Milano, Milano, Italy (1)
Analytical Sciences (1)
Institute of Molecular Medicine and Cell Research, University of Freiburg, D-79104 Freiburg, Germany (1)
University of Turku Faculty of Technology Department of Life Technologies Molecular Plant Biology Group Tykistökatu 6 20520 Turku Finland (1)
Berlin Institute for Medical System Biology @ Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association Robert-Rössle-Straße 10, 13125 Berlin, Germany (1)
Earth and Enviornmental Sciences; Rutgers University-Newark; Newark, NJ, USA (1)
Charité – Universitätsmedizin Berlin, Institut für Translationale Physiologie (CCM), Charitéplatz 1, D-10117 Berlin, Germany (1)
Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7FZ, UK (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Department of Physiology and Biophysics University of Mississippi Medical Cente (1)
Parsons Group Randall Centre for Cell & Molecular Biophysics King's College London UK (1)
Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institut für Vegetative Physiologie (CCM), Charitéplatz 1, D-10117 Berlin, Germany (1)
Berlin Institute of Health (BIH) at Charité – Universitätsmedizin Berlin, BIH Center for Regenerative Therapies (BCRT), Experimental Immunotherapy (1)
Westlake university (1)
TOR center, Department of Dentistry, Uinversity Of Bergen, Norway (1)
Chair of Physiological Genomics, Biomedical Center (BMC), Faculty of Medicine, LMU Munich, Germany (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
CSIC-US, IBVF (1)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (1)
Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universités, 13 rue Pierre et Marie Curie, 75005 Paris (1)

Location

France (1)

Keyword

ELOXATINE (1)
AVASTIN (1)
ELVORINE (1)
FLUOROURACILE (1)
ERBITUX (1)
CAMPTO (1)

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Thermal proteome profilng of BMAL1 ligand CCM in U2OS cell lysate

The master transcription factor BMAL1-CLOCK is crucial for orchestrating rhythmic gene expression and governing circadian rhythms. Pharmacological manipulation of this central circadian regulator requires accessible protein cavities and selective compounds. By targeting BMAL1 through a resident cav...

ORGANISM(S): Homo sapiens (Human)

2025-02-03 | PXD049298 | Pride

Thermal proteome profiling

Macrococcus armenti strain:CCM 2609

Macrococcus armenti CCM 2609 genome sequencing and assembly

PRJNA818849 | ENA

Leptothrix discophora strain:CCM 2812

Leptothrix discophora strain:CCM 2812 Genome sequencing and assembly

PRJNA1002076 | ENA

Flavobacterium psychroterrae strain:CCM 8827

Flavobacterium psychroterrae strain:CCM 8827 Genome sequencing and assembly

PRJNA727812 | ENA

Flavobacterium branchiicola strain:CCM 9061

Flavobacterium branchiicola strain:CCM 9061 Genome sequencing and assembly

PRJNA727823 | ENA

Untargeted LC-MS metabolomics for the analysis of micro-scaled extracellular metabolites from hepatocytes

Metabolome analysis in micro physiological models is a challenge due to the low volume of cell culture medium (CCM). Here, we report a LC-MS-based untargeted metabolomics protocol for the detection of hepatocyte extracellular metabolites from micro-scale samples of CCM. Using a single LC-MS method w...

2021-01-04 | MTBLS1794 | MetaboLights

Acidithiobacillus ferrooxidans strain:CCM 4253

Acidithiobacillus ferrooxidans strain:CCM 4253 Genome sequencing and assembly

PRJNA475418 | ENA

Corynebacterium meridianum strain:CCM 8863

Corynebacterium meridianum strain:CCM 8863 Genome sequencing

PRJNA657131 | ENA

Corynebacterium marambiense strain:CCM 8864

Corynebacterium marambiense strain:CCM 8864 Genome sequencing

PRJNA657134 | ENA

Corynebacterium mendelii strain:CCM 8862

Corynebacterium mendelii strain:CCM 8862 Genome sequencing