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Unknown (18291)
Genomics (12091)
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Proteomics (445)
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Organisms

Mus musculus (6310)
Homo sapiens (4108)
Danio rerio (141)
Drosophila melanogaster (123)
Rattus norvegicus (121)
Arabidopsis thaliana (63)
Gallus gallus (44)
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Caenorhabditis elegans (25)
Schmidtea mediterranea (22)
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Callithrix jacchus (5)
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Chlamydomonas reinhardtii (4)
Phallusia mammillata (4)
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Urocitellus parryii (3)
Ostreococcus tauri (1)
Mus sp. (1)
Murinae (1)

Organisms

Mus musculus (4858)
Homo sapiens (3000)
Olpidium sp. (276)
Danio rerio (110)
Drosophila melanogaster (95)
Rattus norvegicus (67)
Arabidopsis thaliana (34)
Bos taurus (28)
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Sus scrofa (21)
Caenorhabditis elegans (19)
Schmidtea mediterranea (18)
Macaca mulatta (15)
Xenopus laevis (9)
Ciona robusta (9)
unidentified (8)
Capra hircus (7)
Macaca fascicularis (6)
Mus (6)
Oryza sativa Japonica Group (5)
Pleurodeles waltl (4)
Xenopus tropicalis (4)
Canis lupus familiaris (4)
Oryzias latipes (4)
Ciona intestinalis (4)
Saccharomyces cerevisiae (4)
Trypanosoma brucei brucei (3)
Nomascus leucogenys (3)
Mustela putorius furo (3)
Strongylocentrotus purpuratus (3)

Repository

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geo (7772)
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pride (342)
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GNPS (5)
Cell Collective (4)
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ExpressionAtlas (3)
EVA (3)
PeptideAtlas (3)
NODE (2)

Tissue

Cell culture (112)
Embryonic stem cell (38)
Stem cell (23)
Bone marrow (17)
Epithelial cell (16)
Blood (11)
Cell suspension culture (11)
Embryo (11)
T cell (10)
B cell (9)
Brain (8)
Permanent cell line cell (8)
Primary cell (8)
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Whole body (7)
Blood cell (6)
Early embryonic cell (6)
Lung (6)
Lymphocyte of B lineage (6)
Plant cell (6)
Skin (6)
Root (4)
Blood platelet (3)
Colon (3)
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Liver (3)
Melanocyte (3)
Meyloid lineage cells (2)
Others (1)

Disease

Normal (8)
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Ductal breast cancer (2)
Megakaryoblastic leukemia (2)
B cell chronic lymphocytic leukemia (1)
Astrocytoma (1)
Cytomegalovirus seropositive (1)
Vitamin B12 deficiency (1)
Lymphoblastic leukemia (1)
Yersinia enterocolitica WAP infected (virulent) (1)
HIV-1 and Neisseria gonorrhoeae infected (1)
Benign nevi (1)
HIV-associated dementia (1)
LPS-induced acute lung injury (1)
Alopecia (1)
Non-Hodgkin lymphoma (1)
Severe malaria (1)
Infant Acute Lymphoblastic Leukaemia (1)
Not applicable (1)
Asthma (1)
Myeloid neoplasm (1)
Fish tuberculosis (1)
Oligodendroglioma (1)
Non-metastatic melanoma (1)
Erythroleukemia (1)
Mild asthma (1)
T-cell acute lymphoblastic leukemia (1)
Megakaryoblastic leukaemia (1)
Osteosarcoma (1)
None (1)

Technology Type

Mass spectrometry (14)
Mass spectrometry (14)
Mass spectrometry assay (11)
Fluorescence intensity (10)
MEMA (8)
GCP (6)
Illumina HiSeq 2000 (4)
P100 (4)
Illumina HiSeq 4000, ILLUMINA (2)
ILLUMINA, Illumina HiSeq 2000 (2)
Shotgun-MS (2)
Humanomniexpress-24-v1-1-a, Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA (1)
NextSeq 500, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
Illumina HumanOmniExpress-FFPE-12 v1.0 BeadChip (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanMethylation 450K (1)
Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
AB 5500xl Genetic Analyzer (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina Genome Analyzer II (1)
Whole Genome Sequencing (1)
Cellarium (1)
DNA sequencing (1)
Fluorescence imaging (1)
KiNativ (1)
RNA-seq (1)
SWATH-MS (1)

Instrument Platform

Illumina NovaSeq 6000 (117)
NextSeq 500 (69)
Illumina HiSeq 2500 (67)
Illumina HiSeq 2000 (53)
Illumina HiSeq 4000 (44)
NextSeq 550 (13)
Illumina NovaSeq X (11)
Illumina HiSeq 3000 (9)
Illumina MiSeq (8)
NextSeq 2000 (7)
Illumina HiSeq 1500 (7)
Agilent G2565AA and G2565BA Microarray Scanner (5)
Illumina Genome Analyzer II (5)
Illumina Genome Analyzer IIx (4)
Flow Cytometer (4)
MouseWG-6_V2_0_R1_11278593_A (3)
Spectronic Helios Alpha UV-Vis spectrophotometer (3)
GenePix 4000B [Axon Instruments] (3)
NA (3)
Thermomixer (2)
Bio-Rad CFX96 Real-time System (2)
Sony SH800 (2)
Linux computer (2)
Ultracentrifuge (2)
Ion Torrent Proton (2)
DNBSEQ-G400 (2)
BGISEQ-500 (2)
HiSeq X Ten (2)
Hamamatsu Nanozoomer S60 (1)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy), (1)

Publication Date

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2020 (662)
2015 (660)
2013 (613)
2014 (596)
2019 (527)
2016 (516)
2012 (450)
2011 (398)
2018 (393)
2017 (368)
2010 (330)
2008 (225)
2009 (162)
2007 (105)
2005 (23)
2006 (12)
2004 (3)
2003 (2)

UNIPROT ID/AC

Q15406 (2)
Q99626 (2)
Q92908 (2)
Q6ZRP7 (2)
Q8N7R0 (2)
Q01860 (2)
P04637 (2)
A0ELI5 (2)
A0EQY3 (2)
A0JNY3 (2)
A0JNY7 (2)
A0MNP4 (2)
A0PJK7 (2)
A0PK78 (2)
A1A596 (2)
A1E5T5 (2)
A1L013 (2)
A1L0U3 (2)
Q9QX98 (1)
P70661 (1)
P92973 (1)
Q99JB6 (1)
P51450 (1)
P04202 (1)
P42227 (1)
P08505 (1)
P97378 (1)
P01580 (1)
Q9JKD8 (1)
Q9LKL2 (1)

ENSEMBL ID

ENSG00000148200 (2)
ENSG00000165556 (2)
ENSG00000141448 (2)
ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSMUSG00000021039 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141637 (2)
ENSG00000170477 (1)
ENSMUSG00000072849 (1)
ENSMUSG00000076508 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076586 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076731 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)

CHEBI ID

CHEBI:33699 (2)
CHEBI:25078 (1)
CHEBI:13350 (1)
CHEBI:29298 (1)
CHEBI:5785 (1)
CHEBI:25363 (1)
CHEBI:29294 (1)
CHEBI:29299 (1)
CHEBI:24185 (1)
CHEBI:10570 (1)
CHEBI:24194 (1)
CHEBI:12404 (1)
CHEBI:17971 (1)
CHEBI:10566 (1)
CHEBI:39975 (1)
CHEBI:12400 (1)
CHEBI:21312 (1)
CHEBI:13108 (1)
CHEBI:6230 (1)
CHEBI:13113 (1)
CHEBI:46309 (1)
CHEBI:13489 (1)
CHEBI:13506 (1)
CHEBI:9846 (1)
CHEBI:22104 (1)
CHEBI:12927 (1)
CHEBI:59863 (1)
CHEBI:47950 (1)
CHEBI:24112 (1)
CHEBI:20936 (1)

Metabolite Name

L-Phenylalanine (7)
Succinic acid (6)
Citric acid (6)
Adenosine (6)
L-Isoleucine (6)
Ethylmalonic acid (5)
Glycine (5)
Choline (5)
Fumaric acid (5)
Taurine (5)
4-Hydroxybenzaldehyde (5)
Oleamide (5)
Urocanic acid (5)
Spermidine (5)
2-Hydroxycinnamic acid (5)
L-Tryptophan (5)
Glutaric acid (5)
Creatine (5)
L-Tyrosine (5)
Inosine (5)
D-Glucose (4)
Propionylcarnitine (4)
Niacinamide (4)
Carnosine (4)
Kynurenic acid (4)
2-Methylbutyroylcarnitine (4)
L-Arginine (4)
Pantothenic acid (4)
L-Histidine (4)
L-Glutamic acid (4)

First Public Date

2026 (1220)
2024 (1156)
2025 (1101)
2023 (1047)
2019 (848)
2014 (816)
2022 (800)
2020 (715)
2021 (681)
2017 (414)
2018 (391)
2015 (250)
2016 (212)
2013 (197)
2012 (3)
2010 (2)
2011 (1)

Modelling Approach

Ordinary differential equation model (9)
Boolean model (1)
Agent-based model (1)
Differential equation model (1)
Constraint-based model (1)

Study status

Terminated (1)
Not yet recruiting (1)
Completed (1)

Lab affiliation

ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, B-9000 Ghent, Belgium (4)
University of Zurich, Institute of Parasitology (4)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (3)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (3)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel (2)
CNIO (2)
CRUK - Scotland Institute - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (2)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark (2)
University of Edinburgh (2)
Weill Cornell Medical College (2)
1 Department of Medicine - Western Health, The University of Melbourne, Melbourne, Australia The Australian Institute for Musculoskeletal Science (AIMSS), Western Health, Victoria University and The University of Melbourne, Melbourne, Australia 3 Institute for Health and Sport, Victoria University, Melbourne, Australia (1)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada 2 Department of Molecular Genetics, University of Toronto, Toronto, ON M5S1A5, Canada (1)
1. Centre for Gene Therapy and Regenerative Medicine, King’s College London, London, UK 2. Department of Internal Medicine III, University Hospital Carl Gustav Carus at the Technische Universität Dresden, Dresden, Germany (1)
1. Faculty of Biology, Technion - Israel Institute of Technology, Haifa 320003, Israel. 2. Computer Science Department, Technion - Israel Institute of Technology, Haifa 320003, Israel. (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)
1Université Libre de Bruxelles, Laboratory of Stem Cells and Cancer, Brussels B-1070, Belgium. 2WELBIO, Université Libre de Bruxelles, Brussels B-1070, Belgium (1)
Amsterdam UMC location University of Amsterdam, Department of Medical Biochemistry, Amsterdam, the Netherlands. (1)

Keyword

Dexrazoxane (1)
Razoxane (1)
Obatoclax (1)
Vincristine (1)
Doxorubicin (1)
Liposomal doxorubicin (1)
Intestinal microbiota transplantation (1)

IsPrivate

False (13)

Submitter Keywords

Manuscript Accepted (1)
FROG (1)

Classification

protozoa (7)
bacteria (6)
fungi (2)
viruses (2)
helminths (1)

Modification

15.994915 (2)
Not available (2)
-17.026549 (1)
0.984 (1)
15.99491 (1)
42.010565 (1)
57.02146 (1)
6-dioxaoctanediamine derivatized cysteine (1)
N6 (1)

Study type

Transcription profiling by array (1698)
RNA-seq of coding RNA (529)
ChIP-seq (344)
RNA-seq of coding RNA from single cells (125)
Methylation profiling by array (67)
Comparative genomic hybridization by array (49)
Methylation profiling by high throughput sequencing (47)
Unknown experiment type (33)
ChIP-chip by tiling array (33)
Other (31)
RNA-seq of non coding RNA (29)
Genotyping by array (16)
DNA-seq (14)
MicroRNA profiling by array (13)
ChIP-chip by array (12)
Animal - High-throughput sequencing (11)
ATAC-seq (11)
RNA-seq of total RNA (9)
Transcription profiling by tiling array (8)
Transcription profiling by RT-PCR (8)
Baseline (7)
Cell line - High-throughput sequencing (6)
Human - High-throughput sequencing (5)
MicroRNA profiling by high throughput sequencing (5)
Transcription profiling by SAGE (4)
Differential (4)
Animal - One-color microarray (4)
Cell line - One-color microarray (4)
Genotyping by high throughput sequencing (4)
Cell line - Single-cell sequencing (3)

Release Date

2022 (1734)
2021 (1610)
2023 (1605)
2025 (1529)
2024 (1367)
2020 (1346)
2015 (1281)
2016 (1254)
2014 (1232)
2018 (1225)
2019 (1191)
2017 (1099)
2013 (1051)
2012 (829)
2011 (718)
2010 (643)
2009 (411)
2008 (397)
2026 (262)
2007 (228)
2006 (124)
2005 (107)
2004 (58)
2003 (37)
2002 (33)
2001 (23)
1998 (19)
2000 (13)
1999 (12)
1997 (10)

Location

Canada (2)
United States (2)
United Kingdom (1)

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Untargeted metabolomic profiling reveals lineage-associated chemical divergence in Ophiorrhiza sensu lato

This study performed untargeted LC–MS metabolomic profiling of fresh leaf tissues from seven representative Ophiorrhiza sensu lato taxa: O. subpunicea, O. cantonensis, O. pumila, O. shiqianensis, O. humilis, O. huanjiangensis, and O. hispidula. Metabolites were extracted using a methanol–acetonitril...

2026-07-21 | MTBLS15110 | MetaboLights

A mitochondrial NADPH-cholesterol axis regulates extracellular vesicle biogenesis to support hematopoietic stem cell fate

Mitochondrial fatty acid oxidation (FAO) is essential for hematopoietic stem cell (HSC) self-renewal; however, the mechanism by which mitochondrial metabolism controls HSC fate remains unknown. Here, we show that within the hematopoietic lineage, HSCs have the largest mitochondrial NADPH pools, w...

2025-07-07 | MTBLS6401 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

Amidst the mismatch between domestic feed supply and demand in China, along with the competition for food between humans and animals, optimizing feed efficiency has become crucial for industry growth. Nevertheless, the biological processes driving variations in feed efficiency remain unexplored. ...

2026-03-10 | MTBLS14013 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14017 | MetaboLights

A gut-associated Prevotellaceae_NK3B31_group lineage modulates host metabolic pathways and enhances feed efficiency in ducks

2026-03-10 | MTBLS14009 | MetaboLights

B cell expression of the enzyme PexRAP, an intermediary in ether lipid biosynthesis, promotes antibody responses and germinal center size.

The qualities of antibody (Ab) responses provided by B lymphocytes and their plasma cell (PC) descendants are crucial facets of responses to vaccines and microbes. Metabolic processes and products regulate aspects of B cell proliferation and differentiation into germinal center (GC) and PC states...

2026-04-13 | MTBLS13880 | MetaboLights

Chickarmane2008 - Stem cell lineage determination

Chickarmane2008 - Stem cell lineage determination In this work, a dynamical model of lineage determination based upon a minimal circuit, as discussed in PMID: 17215298 , which contains the Oct4/Sox2/Nanog core as well its interaction with a few other key genes ...

2024-09-02 | BIOMD0000000209 | BioModels

Cell of origin epigenetic priming determines susceptibility to Tet2 mutation

Hematopoietic stem cell (HSC) mutations can result in clonal hematopoiesis (CH) with heterogeneous clinical outcomes. Here, we investigated how the cell state preceding Tet2 mutation impacts the pre-malignant phenotype. Using an inducible system for clonal analysis of myeloid progenitors...

2024-04-30 | MTBLS9914 | MetaboLights

Chickarmane2008 - Stem cell lineage - NANOG GATA-6 switch

Chickarmane2008 - Stem cell lineage - NANOG GATA-6 switch In this work, a dynamical model of lineage determination based upon a minimal circuit, as discussed in PMID: 17215298 , which contains the Oct4/Sox2/Nanog core as well its interaction with a few other ke...

2024-09-02 | BIOMD0000000210 | BioModels

Foxp3 exploits a preexistent enhancer landscape for regulatory T cell lineage specification

This SuperSeries is composed of the following subset Series: GSE40684: Foxp3 exploits a preexistent enhancer landscape for regulatory T cell lineage specification [ChIP-Seq] GSE40685: Foxp3 exploits a preexistent enhancer landscape for regulatory T cell lineage specification [Expression] Refer to in...

ORGANISM(S): Mus musculus

2012-09-28 | E-GEOD-40686 | biostudies-arrayexpress