Cell-free biogenesis

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2014 (49)
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CHEBI ID

CHEBI:75196 (2)
CHEBI:138552 (2)
CHEBI:91045 (2)
CHEBI:132599 (2)
CHEBI:71720 (2)
CHEBI:74349 (2)
CHEBI:71712 (2)
CHEBI:136479 (2)
CHEBI:156040 (2)
CHEBI:140365 (2)
CHEBI:134239 (2)
CHEBI:134270 (2)
CHEBI:134451 (2)
CHEBI:136488 (2)
CHEBI:71729 (2)
CHEBI:71721 (2)
CHEBI:71736 (2)
CHEBI:71734 (2)
CHEBI:64433 (2)
CHEBI:66857 (2)
CHEBI:64516 (2)
CHEBI:64517 (2)
CHEBI:66849 (2)
CHEBI:66850 (2)
CHEBI:17202 (2)
CHEBI:25523 (2)
CHEBI:13389 (2)
CHEBI:141588 (2)
CHEBI:32816 (2)
CHEBI:15422 (2)

Metabolite Name

PE(32:1) (2)
PG(32:0) (2)
PG(32:1) (2)
PG(34:2) (2)
PI(35:2) (2)
PI(37:4) (2)
PI(38:2) (2)
PI(38:3) (2)
PI(38:5) (2)
PI(40:4) (2)
PI(40:5) (2)
PI(40:6) (2)
PS(34:2) (2)
PS(36:1) (2)
PS(36:2) (2)
PS(36:4) (2)
PS(38:4) (2)
PS(40:6) (2)
PI(38:4) (2)
PE(38:5) (2)
PE(36:2) (2)
PI(36:1) (2)
PI(36:2) (2)
PI(36:3) (2)
PI(36:4) (2)
PI(34:3) (2)
PI(34:2) (2)
PE(38:4) (2)
PE(38:3) (2)
NADP (2)

First Public Date

2025 (8)
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2026 (4)
2024 (4)
2014 (4)
2022 (3)
2021 (3)
2020 (2)
2019 (2)
2017 (1)
2016 (1)

Classification

bacteria (2)
protozoa (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (123)
RNA-seq of coding RNA (57)
RNA-seq of non coding RNA (28)
ChIP-seq (20)
Other (9)
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Animal - High-throughput sequencing (3)
Hi-C (2)
Transcription profiling by high throughput sequencing (1)
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Comparative genomic hybridization by array (1)
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MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2014 (56)
2015 (45)
2021 (38)
2010 (34)
2025 (33)
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2011 (32)
2013 (31)
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2024 (23)
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2004 (2)
2005 (1)

Lab affiliation

Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (3)
Molecular Genetics, RPTU Kaiserslautern (3)
Laboratory of Membrane Biogenesis, University of Bordeaux, France (2)
Max Planck Institute of Biochemistry Department of Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried, Germany (2)
University of Copenhagen, Novo Nordisk Center for Protein Research, Proteomics Department, Proteomics and Cell Signaling Lab (2)
1Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, 12 rue Zimmer, 67000 Strasbourg, France. (1)
AG Joachim Kopka Max-Planck-Institut für Molekulare Pflanzenphysiologie Wissenschaftspark Golm Am Mühlenberg 1 14476 Potsdam, Germany (1)
Baker Heart and Diabetes Inst. (1)
BioDiscovery Institute, Department of Biological Sciences, University of North Texas (1)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (1)
Center for Medical Biochemistry, Max Perutz Labs, Medical University of Vienna, Vienna BioCenter(VBC), Austria (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, Třeboň,CZ. (1)
Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K. (1)
Department Langer - Mitochondrial Proteostasis Max-Planck Institut für Altersforschung Joseph-Stelzmann Str 9b 50931 Cologne, Germany (1)
Department of Biochemistry & Biomedicine, School of Life Sciences, University of Sussex (1)
Department of Biochemistry and Functional Proteomics, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg, Germany (1)
Department of Biochemistry and Molecular Biology, the Institute for Medical Research Israel ג€“ Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel, 9112001. (1)
Department of Biology, University Kaiserslautern, Germany. (1)
Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland (1)
Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden (1)
Department of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry and biomolecular sciences, Australian Proteome Analysis facility, Sydney, Australia. (1)
Department of Chemistry, Chemical Biology Centre and State Key Laboratory of Synthetic Chemistry, The University of Hong Kong (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Department of Microbiology, Institute of Clinical medicine, University of Oslo, Norway. (1)
Department of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada, N1G 2W1; bSPARC BioCentre, The Hospital for Sick Children, Toronto, ON, Canada, M5G 0A4. (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic ORCID logohttp://orcid.org/0000-0001-6976-8446 (1)
Department of Pathophysiology, Second Faculty of Medicine, Charles University in Prague (1)
Dept. of Biology University of Fribourg Chemin du Musee 10 CH-1700 Fribourg (1)

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Sequential lipidomic, metabolomic, and proteomic analyses of serum, liver, and heart tissue specimens from peroxisomal biogenesis factor 11α knockout mice

Peroxisomes are versatile single membrane-enclosed cytoplasmic organelles, involved in reactive oxygen species (ROS) and lipid metabolism and diverse other metabolic processes. Peroxisomal disorders result from mutations in Pex genes-encoded proteins named peroxins (PEX proteins) and single peroxiso...

2022-02-02 | MTBLS1887 | MetaboLights

ECM deposition is driven by caveolin1-dependent regulation of exosomal biogenesis and cargo sorting

The composition and physical properties of the extracellular matrix (ECM) critically influence tumor progression, but the molecular mechanisms underlying ECM layering are poorly understood. Tumor-stroma interaction is critically dependent on cell-cell communication mediated by exosomes, small ves...

2020-10-07 | MTBLS1977 | MetaboLights

ECM deposition is driven by caveolin1-dependent regulation of exosomal biogenesis and cargo sorting

2020-10-07 | MTBLS1969 | MetaboLights

A Drosophila model for the Zellweger spectrum of peroxisome biogenesis disorders

Human peroxisome biogenesis disorders are lethal genetic disease in which abnormal peroxisome assembly compromises overall peroxisome and cellular function. Peroxisomes are ubiquitous membrane-bound organelles involved in several important biochemical processes, notably lipid metabolism and the use ...

ORGANISM(S): Drosophila melanogaster

2011-07-02 | E-GEOD-30362 | biostudies-arrayexpress

Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (ChIP-Seq data)

TORC1 is a structurally and functionally conserved multiprotein complex that regulates many aspects of eukaryote growth including the synthesis and assembly of ribosomes. The protein kinase activity of this complex is responsive to environmental cues and is potently inhibited by the natural product ...

ORGANISM(S): Saccharomyces cerevisiae

2011-07-01 | E-GEOD-29124 | biostudies-arrayexpress

Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L (mRNA-Seq data)

ORGANISM(S): Saccharomyces cerevisiae

2011-07-01 | E-GEOD-29122 | biostudies-arrayexpress

Runx1 deficiency decreases ribosome biogenesis and confers stress resistance to hematopoietic stem and progenitor cells

The transcription factor RUNX1 is frequently mutated in myelodysplastic syndrome and leukemia. RUNX1 mutations can be early events, creating pre-leukemic stem cells that expand in the bone marrow. Here we show that, counter-intuitively, Runx1 deficient hematopoietic stem and progenitor cells (HSPCs)...

ORGANISM(S): Mus musculus

2015-07-27 | E-GEOD-67609 | biostudies-arrayexpress

Autonomous biogenesis of all thirty proteins of the E. coli translation machineryk

The cell-free biogenesis of the protein translation machinery is essential for the creation of a self-regenerating synthetic cell. Here, we demonstrate the autonomous and simultaneous biogenesis of all thirty proteins of the translation machinery of E. coli in a reconstituted transcription-translati...

ORGANISM(S): Escherichia coli

2025-12-09 | PXD071320 | Pride

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

Parental dietary conditions can influence the metabolic traits of offspring. In mice, paternal consumption of low protein diet alters cholesterol and lipid metabolism of progeny. Here, we examine RNA species expressed in male reproductive tissues of mice. Protein restriction leads to altered levels ...

ORGANISM(S): Mus musculus

2016-01-04 | E-GEOD-74537 | biostudies-arrayexpress

Cells and exosomes after cell-free culture

PRJNA259429 | ENA

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