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MetabolomicsResearch on the Molecular Mechanism of Fiber Formation in the Suture of Snap Bean (Phaseolus vulgaris L.) Pods

The tender pod is the primary edible part of the snap bean (Phaseolus vulgaris L.), and the level of suture fiber content is one of the key factors affecting its edible quality. To elucidate the key regulatory mechanisms and metabolic basis underlying suture fiber formation in pods, this study em...

2026-01-30 | MTBLS13805 | MetaboLights
MetabolomicsA high-fiber diet mimics aging-related signatures of caloric restriction in mammals

Caloric restriction (CR) delays aging-related hallmarks in various organisms by slowing growth and development while enhancing metabolic homeostasis. However, desirable diets that harness the metabolic benefits of CR without imposing food intake restrictions remain elusive. Here we evaluated the ...

2025-06-13 | MTBLS12479 | MetaboLights
TranscriptomicsExpression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose
This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...
ORGANISM(S): Ruminococcus flavefaciens FD-1 
2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress
TranscriptomicsExpression profiling of cotton (Gossypium hirsutum L. TM1) fiber transcriptome during the development
In order to study gene expression at the genomic level during elongation and secondary cell wall synthesis of upland cotton fiber, oligonucleotide microarrays were employed. RNA was isolated from fibers in 7 different time points beginning prior to peak fiber expansion, continuing through terminatio...
ORGANISM(S): Gossypium hirsutum 
2010-05-26 | E-GEOD-11693 | biostudies-arrayexpress
ProteomicsAnalysis of cellulose synthesis in a high‑producing acetic acid bacterium Komagataeibacter hansenii
Bacterial cellulose (BC) represents a renewable biomaterial with unique properties promising for biotechnology and biomedicine. Komagataeibacter hansenii ATCC 53,582 is a well-characterized high-yield producer of BC used in the industry. Its genome encodes three distinct cellulose synthases (CS), bc...
ORGANISM(S): Komagataeibacter 
2023-03-30 | PXD037699 | Pride
Bacterial cellulose Markerless deletion Cellulose fiber Komagataeibacter hansenii Acetic acid bacteria 
TranscriptomicsThe evolution of spinable cotton fiber entailed prolonged development and a novel metabolism
exceptional example of evolutionary innovation is the single-celled seed trichome in Gossypium ("cotton fiber"). We have used fiber development in Gossypium as a system to understand how morphology can rapidly evolve. Fiber has undergone considerable morphological changes between the short, tightly...
ORGANISM(S): Gossypium herbaceum 
2010-06-25 | E-GEOD-10228 | biostudies-arrayexpress
TranscriptomicsCotton Fiber Development Time-course Analysis
To get glance to the events of the fast elongation and second cell wall synthesis stages of developing cotton fiber cells, we examined expression patterns of over 5000 genes by cDNA array from 3 to 18 DPA in a 3-day interval. RNAs from the 3-, 6-, 9-, 12-, 15-, and 18-DPA fibers were compared to the...
ORGANISM(S): Gossypium hirsutum 
2006-04-12 | E-GEOD-4639 | biostudies-arrayexpress
TranscriptomicsComparative analysis of transcriptome profiles of G. hirsutum L. cv. MCU5 and its fuzzless-lintless mutant during fiber development stages.
Cotton is one of the most commercially important Fiber crops in the world and used as a source for natural textile Fiber and cottonseed oil. The fuzzless-lintless ovules of cotton mutants are ideal source for identifying genes involved in Fiber development by comparing with Fiber bearing ovules of w...
ORGANISM(S): Gossypium hirsutum 
2013-06-14 | E-GEOD-38490 | biostudies-arrayexpress
UnknownImproving the sensitivity of cellulose fiber-based lateral flow assay by incorporating a water-dissolvable polyvinyl alcohol dam.
Not available
S-EPMC8286161 | biostudies-literature
TranscriptomicsRNA-seq of liver from Ldlr-/- mouse fed with inulin or cellulose supplemented atherogenic diet
Dietary fiber such as inulin have been reported to promote cardiovascular and metabolic health. However, the mechanisms involved are not well understood. We studied effects of inulin on lipid metabolism in Ldlr deficient atherosclerosis mouse model using lipidomics and transcriptomics. Plasma and ti...
ORGANISM(S): Mus musculus 
2020-01-02 | E-MTAB-8259 | biostudies-arrayexpress
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