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TranscriptomicsEvidence of a critical role for cellodextrin transporter 2 (CDT-2) in both cellulose and hemicellulose degradation and utilization in Neurospora crassa
CDT-1 and CDT-2 are two cellodextrin transporters discovered in the filamentous fungus Neurospora crassa. Previous studies focused on characterizing the role of these transporters in only a few conditions, including cellulose degradation, and the function of these two transporters is not yet complet...
ORGANISM(S): Neurospora crassa 
2014-09-25 | E-GEOD-44673 | biostudies-arrayexpress
ProteomicsScreening and metabolic utilization of rice straw cellulose-degrading bacteria
In order to improve the utilization rate of straw, Cellomonas Iranensis (CE) , a cellulose-degrading bacterium, was isolated from the gut of termites by Congo red screening and filter paper degradation re-screening. The enzyme activities of endogenous glucosidase, exogenous glucosidase and β-glucosi...
ORGANISM(S): Cellulomonas Iranensis 
PXD065376 |
ProteomicsProteomic response to the thaxtomin phytotoxin elicitor cellobiose and to the deletion of the cellulose utilization regulator CebR in Streptomyces scabies
Streptomyces scabies is a plant pathogen responsible for common scab disease on root and tuber crops. The transport of the cellulose by-products cellobiose and cellotriose into the cell induces the biosynthesis of the main phytotoxin thaxtomin A. These carbohydrates bind to the cis-acting sequences ...
ORGANISM(S): Streptomyces scabiei 87.22 
2018-10-18 | PXD007820 | Pride
Streptomyces scabies Lc-mse Pathogenicity Synapt ms 
TranscriptomicsGlobal Analysis of Carbohydrates Utilization of the Alkaline Hemicellulytic Bacteria Bacillus sp. N16-5
Alkaline hemicellulytic bacteria Bacillus sp. N16-5 has abroad substrate spectrum and exhibits great growth ability on complex carbohydrates. In order to get insight into its carbohydrate utilization mechanism, global transcriptional profiles were separately determined for growth on glucose, fructos...
ORGANISM(S): Bacillus sp. N16-5 
2014-06-17 | E-GEOD-38276 | biostudies-arrayexpress
TranscriptomicsConserved and Essential Transcription Factors for Cellulase Gene Expression in Ascomycete Fungi.
Transcriptional profiling with next-generation sequencing methods refined our understanding of the N. crassa transcriptional response to cellulose and demonstrated that the newly characterized transcription factors clr-1 and clr-2 were required for the bulk of that response including induction all m...
ORGANISM(S): Neurospora crassa OR74A 
2012-04-23 | E-GEOD-35227 | biostudies-arrayexpress
TranscriptomicsOrthogonal metabolism of cellodextrin and xylodextrin is the keystone of synchronous utilization of cellulose and hemicellulose in Myceliophthora thermophila
Plant biomass holds tremendous potential as a renewable feedstock in the production of biofuels and biochemicals. The effective co-utilization of the main components cellulose and hemicellulose in plant lignocellulose is critical to the economic viability of lignocellulosic biorefineries. Here, we f...
ORGANISM(S): Thermothelomyces thermophilus 
2024-02-28 | GSE222371 | GEO
GenomicsOrthogonal metabolism of cellodextrin and xylodextrin is the keystone of synchronous utilization of cellulose and hemicellulose in Myceliophthora thermophila
Orthogonal metabolism of cellodextrin and xylodextrin is the keystone of synchronous utilization of cellulose and hemicellulose in Myceliophthora thermophila
PRJNA921300 | ENA
ProteomicsBlocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components.
Fungi produce a wide range of enzymes that allow them to grow on diverse plant biomass. Wheat bran is a low-cost substrate with high potential for biotechnological applications. It mainly contains cellulose and (arabino)xylan, with starch, proteins, lipids and lignin as minor components. In this stu...
ORGANISM(S): Aspergillus niger NRRL3 
2021-06-28 | PXD023338 | Pride
Aspergillus niger Combinatorial deletions Lc-msms. Transcription factors Plant biomass Regulation 
TranscriptomicsExpression analysis of Cellvibrio japonicus grown in either glucose or cellulose
Investigation of whole genome gene expression level changes in Cellvibrio japonicus wild-type, comparing glucose vs cellulose. Study was purposed with determining changes in polysaccharide degradation pathways during utilization of insoluble cellulose.
ORGANISM(S): Cellvibrio japonicus Cellvibrio japonicus Ueda107 
2014-10-07 | GSE62106 | GEO
TranscriptomicsCarbon Source Induced Gene Expression
Investigation of whole genome gene expression level changes in Streptomyces sp. SirexAA-E (ActE) when grown on different carbon sources. The results of this study demonstrate that ActE upregulates a small number of genes specific for the utilization of the avaliable carbon source. Cellulolytic Stre...
ORGANISM(S): Streptomyces sp. SirexAA-E 
2013-12-31 | E-GEOD-31748 | biostudies-arrayexpress
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