Cereals - OmicsDI

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Unknown (2473)
Genomics (239)
Transcriptomics (101)
Proteomics (38)
Metabolomics (14)
Other (2)
Models (1)

Organisms

Hordeum vulgare (30)
Oryza sativa (22)
Triticum aestivum (18)
Oryza sativa Japonica Group (15)
Zea mays (13)
Blumeria hordei (4)
Oryza sativa Indica Group (3)
Brachypodium distachyon (3)
Secale cereale (3)
Aegilops tauschii (3)
Zea mays subsp. mays (2)
Arabidopsis thaliana (2)
Hordeum vulgare subsp. spontaneum (2)
Gallus gallus (2)
Setaria viridis (2)
Triticum urartu (2)
Drosophila (1)
Triticum turgidum (1)
Chamaelirium luteum (1)
Fusarium graminearum (1)
Sus scrofa (1)
Homo sapiens (1)
Salmonella enterica subsp. enterica serovar Agona (1)
Avena sativa (1)
Brachypodium (1)
Prosthechea radiata (1)
Raddia brasiliensis (1)
Echinodorus uruguayensis (1)
Streptochaeta angustifolia (1)
Zostera marina (1)

Organisms

Hordeum vulgare (19)
Oryza sativa (12)
Triticum aestivum (9)
Zea mays (7)
Brachypodium distachyon (6)
pig gut metagenome (3)
food fermentation metagenome (3)
Bipolaris sorokiniana (2)
Fusarium poae (2)
Avena sativa (2)
Oryza sativa Japonica Group (2)
Sorghum bicolor (2)
Mycosphaerellaceae (1)
Gaeumannomyces graminis (1)
Bipolaris maydis ATCC 48331 (1)
Azospirillum lipoferum (1)
Microdochium nivale (1)
Pyricularia oryzae B157 (1)
Diuraphis noxia (1)
Dactylonectria torresensis (1)
Fusarium tricinctum species complex (1)
Puccinellia tenuiflora (1)
Streptochaeta angustifolia (1)
Pyricularia oryzae MG01 (1)
Claviceps purpurea (1)
Ligilactobacillus hayakitensis (1)
Eleusine coracana (1)
Sitobion avenae (1)
Polerovirus (1)
Puccinia striiformis (1)

Repository

ENA (231)
geo (57)
biostudies-arrayexpress (54)
pride (31)
MetaboLights (14)
MassIVE (4)
BioModels (1)
iProX (1)
jPOST (1)
PAXDB (1)

Tissue

Plant cell (4)
Leaf (4)
Endosperm (3)
Seed (3)
Dental plaque (2)
Shoot (2)
Lower epidermis (1)
Spikelet (1)
Hypha (1)
Kernel (1)
Hyphal cell (1)
Fungal cell (1)
Intestine (1)
Flower (1)
Muscle (1)
Blood serum (1)
Feces (1)
Root (1)
Liver (1)

Disease

Food allergy (1)
Respiratory allergy (1)
Celiac disease (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (19)
Mass spectrometry (9)
Bottom-up proteomics (5)
Mass spectrometry assay (4)
Gel-based experiment (3)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
HDMSE (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Q Exactive (3)
Illumina HiSeq 2000 (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Hisat2 v2.0.5 (1)
DESeq (1)
Growthroom (1)
Illumina Novaseq platform (1)
Agilent G2505B (1)
Ion Torrent Proton (1)
Illumina HiSeq 4000 (1)
4000 QTRAP (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
Compact™ QTOF-MS (Bruker) (1)
Thermo Trace GC PolarisQ (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - - reverse phase (1)
Bruker (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (18)
2026 (16)
2013 (15)
2012 (11)
2020 (11)
2019 (11)
2015 (10)
2014 (9)
2011 (9)
2021 (8)
2022 (7)
2018 (7)
2024 (6)
2017 (5)
2010 (5)
2009 (5)
2023 (3)
2016 (2)
2008 (2)
2005 (1)
2006 (1)

UNIPROT ID/AC

4565.Traes_6DL_7374E401C.1 (1)
A0A3B6I386_WHEAT (1)
A0A3B6KFW8_WHEAT (1)
A0A3B6CH58_WHEAT (1)
A0A3B6IP13_WHEAT (1)
A0A3B6B2Z6_WHEAT (1)
A0A3B6HUX0_WHEAT (1)
SSG1_WHEAT (1)
A0A3B6HXF8_WHEAT (1)
A0A3B6REF0_WHEAT (1)
IAA2_WHEAT (1)
A0A3B6C098_WHEAT (1)
A0A3B6NQ47_WHEAT (1)
GLT3_WHEAT (1)
I6QQ39_WHEAT (1)
A0A077S6R6_WHEAT (1)
A0A3B6HUU6_WHEAT (1)
4565.Traes_2DL_69F59DE9F.1 (1)
A0A3B6JER7_WHEAT (1)
A0A3B6JJY2_WHEAT (1)
A0A3B6HMV9_WHEAT (1)
A0A3B6DHQ0_WHEAT (1)
A0A1D6D981_WHEAT (1)
A0A3B6JIY6_WHEAT (1)
A0A3B6SFX4_WHEAT (1)
A0A3B6CHB5_WHEAT (1)
A0A3B6QHZ2_WHEAT (1)
A0A3B5XUN5_WHEAT (1)
A0A3B5ZMJ2_WHEAT (1)
A0A3B6CCL6_WHEAT (1)

CHEBI ID

CHEBI:15354 (5)
CHEBI:16704 (5)
CHEBI:15741 (5)
CHEBI:18346 (4)
CHEBI:36062 (4)
CHEBI:18344 (4)
CHEBI:28635 (4)
CHEBI:17992 (4)
CHEBI:18012 (4)
CHEBI:30769 (4)
CHEBI:17750 (4)
CHEBI:17596 (4)
CHEBI:16335 (4)
CHEBI:16750 (4)
CHEBI:17748 (4)
CHEBI:16856 (4)
CHEBI:27897 (4)
CHEBI:6650 (4)
CHEBI:22653 (4)
CHEBI:28300 (4)
CHEBI:18237 (4)
CHEBI:17234 (4)
CHEBI:17488 (3)
CHEBI:24168 (3)
CHEBI:19274 (3)
CHEBI:30764 (3)
CHEBI:73215 (3)
CHEBI:17189 (3)
CHEBI:48093 (3)
CHEBI:89205 (3)

Metabolite Name

L-Tryptophan (4)
Scopoletin (3)
Glycerol 3-phosphate (3)
Herniarin (3)
Kynurenic acid (3)
Xanthosine (3)
Uridine (3)
Threonine (3)
Taurine (3)
Inosine (3)
Asparagine (3)
Azelaic acid (3)
L-Phenylalanine (3)
L-Glutamine (3)
L-Serine (3)
Guanosine (3)
Inosine (3)
Uridine (3)
Testolactone (2)
3,7-Dihydroxy-12-oxocholanoic acid (2)
Phenylethylmalonamide (2)
3-Oxodecanoic acid (2)
Alpha-CEHC (2)
Vulgarin (2)
Alectrol (2)
Perphenazine (2)
Doisynoestrol (2)
Idazoxan (2)
Gibberellin A29-catabolite (2)
Gibberellin A34-catabolite (2)

First Public Date

2025 (28)
2020 (25)
2014 (24)
2026 (23)
2019 (20)
2018 (20)
2013 (18)
2023 (15)
2024 (14)
2022 (14)
2021 (10)
2015 (7)
2017 (6)
2016 (6)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
School of Molecular Sciences, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. The ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia. harvey.millar@uwa.edu.au. (2)
DIVAS, University of Milan (2)
Institute for Systems Biology (2)
Dept. of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University (1)
Dept. Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia. (1)
Royal Holloway, University of London (1)
McDonald Professor of Palaeoproteomics, McDonald Institute for Archaeological Research, University of Cambridge, UK (1)
Institute of Neuroimmunology, Slovak Academy of Sciences (1)
Chair of Phytopathology, TUM School of Life Sciences Technische Universitaet Muenchen, Freising-Weihenstephan, Germany (1)
Prof. Luigia Pazzagli, PhD. Professore Associato di Biochimica (BIO/10) Specialista in Biochimica e Biochimica Clinica, Dipartimento di Scienze Biomediche Sperimentali e Cliniche, Viale Morgagni 50, 50134 Firenze Tel. 0552751258 Mail. luigia.pazzagli@unifi.it (1)
Departamento de Produção Animal Instituto Superior de Agronomia Tapada da Ajuda 1349-017 Lisboa Portugal (1)
Université Clermont Auvergne, INRAE, UMR 1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France (1)
Molecular and Cellular Biology Department, University of Guelph, 50 Stone Rd. E. Guelph, Ontario, Canada, N1G 2W1 (1)
Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, Manchester Institute of Biotechnology, University of Manchester, Manchester, UK (1)
BioArCh, University of York, United Kingdom (1)
CSIRO Agriculture and Food (1)
Max Planck Institute for the Science of Human History Department of Archaeogenetics (1)
University of Vienna (1)
Research Group: Food Biopolymer Chemistry, Leibniz Institute for Food Systems Biology at the Technical University of Munich (Leibniz-LSB@TUM), Freising, Germany (1)
Laboratory of Organic Mass Spectrometry, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy (1)
Manchester Institute of Biotechnology, School of Biological Sciences, Manchester Academic Health Sciences Centre, The University of Manchester, Princess Street, Manchester, M1 7DN, UK (1)
Dept. of Biochemistry, Universidade Federal do Parana, Curitiba-PR, Brazil (1)
Max Planck Institute for the Science of Human History (1)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
School of Biosciences University of Sheffield Western Bank Sheffield S10 2TN United Kingdom (1)
Biological Chemistry (1)

IsPrivate

False (1)

Classification

fungi (4)
viruses (1)
bacteria (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (16)
Unknown experiment type (1)
ChIP-seq (1)

Release Date

2022 (307)
2021 (266)
2023 (264)
2025 (251)
2020 (239)
2024 (213)
2019 (192)
2018 (140)
2016 (121)
2017 (116)
2015 (83)
2014 (77)
2012 (56)
2013 (49)
2011 (35)
2026 (31)
2010 (23)
2009 (17)
2008 (14)
2005 (8)
2002 (6)
2006 (5)
2004 (3)
2003 (3)
2007 (2)
2001 (2)
1999 (2)
1998 (1)

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fermented cereals

fermented cereals Transcriptome

PRJNA850141 | ENA

Identification of high temperature and daylength responsive genes in barley

High temperature influences plant development and can reduce crop yields. We used the Agilent Barley Gene Expression Microarray to identify high temperature responsive genes in cereals. In temperate cereals, such as wheat and barley, high temperature results in rapid progression through reproductive...

ORGANISM(S): Hordeum vulgare

2012-04-03 | E-GEOD-33938 | biostudies-arrayexpress

Relative quantitation of coeliac toxic motifs and IgE epitopes in cereals containing gluten using proteomic profiling

Cereals-based foods cause immune-mediated adverse reactions including coeliac disease and IgE-mediated allergies. Proteomic profiling of proteins carrying coeliac toxic motifs and allergens has been undertaken in wheat, barley, rye and oats in order to understand whether some cereal species, such as...

ORGANISM(S): Triticum aestivum (Wheat) Hordeum vulgare (Barley) Secale cereale Avena sativa

2026-02-23 | PXD039539 | Pride

RNA-seq on touch responses in cereals

PRJEB52944 | ENA

Nutrition-Oriented Reformulation of Extruded Cereals and Associated Environmental Footprint: A Case Study.

Not available

S-EPMC7555475 | biostudies-literature

The Polycomb Group Gene EMF2B is required for meristem determinacy and organ specification in rice flowers.

The Polycomb Repressive Complex 2 (PRC2) represses the transcriptional activity of target genes through trimethylation of Lysine 27 of Histone H3. The functions of the plant PRC2 have been chiefly described in Arabidopsis but specific PRC2 functions in other plant species, especially the cereals, ar...

ORGANISM(S): Oryza sativa Japonica Group

2014-10-31 | E-GEOD-49633 | biostudies-arrayexpress

Fusarium species

Fusarium species associated with cereals

PRJNA912255 | ENA

Nutritional Quality of Breakfast Cereals on the French, Belgian and Luxembourg Markets: Which Cereals for Children?

Not available

S-EPMC11357527 | biostudies-literature

food fermentation metagenome

Cereals starter (Daqu) Metagenome

PRJNA272362 | ENA

food fermentation metagenome