Chan C C - OmicsDI

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Unknown (12865)
Transcriptomics (441)
Proteomics (376)
Genomics (198)
Metabolomics (26)
Genomic (3)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (385)
Mus musculus (118)
Arabidopsis thaliana (21)
Saccharomyces cerevisiae (18)
Rattus norvegicus (10)
Bifidobacterium breve UCC2003 (6)
Mycobacterium tuberculosis (6)
Ruegeria pomeroyi DSS-3 (3)
Salmonella enterica subsp. enterica serovar Typhimurium (3)
Drosophila melanogaster (3)
Helicoverpa zea (2)
Phalaenopsis aphrodite subsp. formosana (2)
Oryza sativa (2)
Ovis aries (2)
cellular organisms (1)
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Brucella abortus str. 2308 A (1)
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Mus musculus domesticus (1)
synthetic construct (1)
Schizosaccharomyces pombe (1)
Geobacter sulfurreducens (1)

Organisms

Caenorhabditis elegans (20)
Homo sapiens (15)
Mus musculus (6)
Pseudomonas aeruginosa CF18 (1)
Drosophila melanogaster (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (481)
pride (310)
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geo (2)
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Tissue

Cell culture (60)
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Heart (9)
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Lung (7)
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Cell suspension culture (5)
Kidney (5)
Blood (5)
Leukocyte (4)
Whole body (4)
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Stomach (3)
Breast (3)
Ovary (3)
Plant cell (3)
Macrophage (3)
Plasma Non-glyco (1)

Disease

Breast cancer (18)
Acute leukemia (9)
Opportunistic bacterial infectious disease (6)
Parkinson's disease (5)
Colon cancer (5)
Type 2 diabetes mellitus (4)
Severe acute respiratory syndrome (3)
Pancreatic ductal carcinoma (3)
Lymphoma (3)
Cervix carcinoma (3)
Amyotrophic lateral sclerosis (3)
Malignant neoplasm of ovary (3)
COVID-19 (3)
Disease free (3)
Acute myeloid leukemia (2)
Oral squamous cell carcinoma (2)
Cryptococcosis (2)
Diabetes mellitus (2)
Skin melanoma (2)
Alzheimer's disease (2)
Wounds and Injuries (2)
Bacterial infectious disease (1)
Wild type (1)
Breast Carcinoma (1)
Angiogenic chondrosarcoma (1)
Invasive ductal carcinoma (1)
Normal (1)
Developmental and epileptic encephalopathy 2 (1)
Acral lentiginous melanoma (1)
Lymphoblastic lymphoma (1)

Technology Type

Mass Spectrometry (310)
Shotgun proteomics (143)
Bottom-up proteomics (70)
Data-dependent acquisition (39)
Affinity purification coupled with mass spectrometry proteomics (35)
Mass spectrometry (21)
SWATH MS (19)
Gel-based experiment (18)
Data-independent acquisition (12)
Top-down proteomics (12)
SRM/MRM (8)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (4)
RNA mass spectrometry (4)
DiaPASEF (4)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Affinity proteomics (1)
MSE (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2000 (15)
Q Exactive (9)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2500 (7)
Orbitrap Fusion Lumos (7)
LTQ Orbitrap Velos (6)
LTQ Orbitrap Elite (4)
Orbitrap Eclipse (4)
Illumina NovaSeq X (3)
Illumina HiSeq 4000 (3)
NextSeq 2000 (2)
Q Exactive HF (2)
Orbitrap Astral (2)
LTQ Orbitrap XL (2)
NEBNext Ultra II RNA Library Prep Kit (1)
NEBNext Globin and rRNA Depletion Kit (1)
PAXgene Blood RNA tubes (1)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
PacBio RS II (1)
AB SOLiD 4 System (1)
ScanArray [PerkinElmer] (1)
Other (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Agilent NGS Workstation (1)
HiSeq X Ten (1)
NextSeq 500 (1)

Publication Date

2025 (95)
2013 (83)
2010 (62)
2023 (61)
2012 (58)
2014 (56)
2022 (53)
2026 (52)
2011 (46)
2021 (39)
2016 (36)
2024 (35)
2015 (35)
2020 (29)
2019 (28)
2008 (28)
2007 (20)
2018 (18)
2009 (16)
2017 (9)
2006 (8)
2005 (7)
2004 (1)
2002 (1)

UNIPROT ID/AC

P29350 (1)
P06239 (1)
Q86Y38 (1)
P01768 (1)
Q8TAG5-2 (1)
Q8TAG5 (1)
Q8IWU5 (1)
P04280 (1)
P09603 (1)
P51693 (1)
P20929 (1)
Q6ZP85 (1)
Q71U42 (1)
Q9NQ79-2 (1)
Q9NQ79 (1)
Q96NZ9 (1)
Q96KN2 (1)
Q8IUK5 (1)
Q6UXB8 (1)
Q16610-2 (1)
Q13822-3 (1)
Q13822 (1)
P55058 (1)
P55056 (1)
P54108 (1)
P49908 (1)
P48740 (1)
P33151 (1)
P22891 (1)
P19961 (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (7)
CHEBI:15428 (7)
CHEBI:18257 (7)
CHEBI:25017 (7)
CHEBI:7916 (6)
CHEBI:17268 (6)
CHEBI:15756 (6)
CHEBI:6650 (6)
CHEBI:27266 (6)
CHEBI:17154 (6)
CHEBI:28044 (6)
CHEBI:30805 (5)
CHEBI:27432 (5)
CHEBI:28875 (5)
CHEBI:28842 (5)
CHEBI:16196 (5)
CHEBI:16113 (5)
CHEBI:17148 (5)
CHEBI:18107 (5)
CHEBI:18132 (5)
CHEBI:17126 (5)
CHEBI:17750 (5)
CHEBI:16020 (5)
CHEBI:17568 (5)
CHEBI:16750 (5)
CHEBI:27897 (5)
CHEBI:16958 (5)
CHEBI:17822 (5)
CHEBI:15741 (5)
CHEBI:28300 (5)

Metabolite Name

Ornithine (4)
PI 36:1 (3)
PI 34:1 (3)
PG 36:1 (3)
PC 35:0 (3)
PS 36:2 (3)
PS 36:1 (3)
PC 34:0 (3)
PC 33:1 (3)
PC 31:0 (3)
PC 33:0 (3)
PG 36:2 (3)
PG 34:2 (3)
PG 34:1 (3)
PE 36:3 (3)
PE 36:1 (3)
PE 34:3 (3)
PC 38:2 (3)
PC 36:3 (3)
PC 36:2 (3)
PC 35:2 (3)
PC 34:3 (3)
PC 34:2 (3)
PC 34:1 (3)
PC 33:2 (3)
PC 32:0 (3)
PI 36:2 (3)
PI 36:3 (3)
PE 34:1 (3)
PE 36:2 (3)

First Public Date

2026 (14)
2023 (12)
2025 (9)
2024 (8)
2022 (7)
2021 (1)
2020 (1)
2019 (1)
2018 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Chemical & Systems Biology, Stanford University (7)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (6)
The University of Melbourne (5)
Center of Molecular and Cellular Oncology, Yale University (4)
Underwood-Prescott Professor, Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 56-731 Cambridge, MA 02139-4307 (4)
Harvard medical school (3)
Institute of Cancer Research, London (3)
Department of Cell Biology, Harvard Medical School, Boston MA (3)
The Institute of Cancer Research (3)
Indiana University School of Medicine (3)
Functional Proteomics, ICR (3)
King's College London, British Heart Foundation Centre, School of Cardiovascular Medicine and Sciences, London, UK (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
School of Optometry, The Hong Kong Polytechnic University (2)
Program in Molecular Medicine, UMass Chan Medical School (2)
Harvard T. H. Chan School of Public Health (2)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (2)
Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia (2)
Associate Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (2)
Lung and Vascular Inflammation Section, Laboratory of Allergic Diseases, NIAID/NIH Bethesda, MD 20892, USA (2)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (2)
Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605-2377, USA (2)
Harvard School of Public Health (2)
Department of Genetics, Stanford University (2)
Chan Zuckerberg Biohub (2)
Cancer Science Institute of Singapore, National University of Singapore, Singapore (2)
School of Biomedical Sciences, The University of Hong Kong (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
UMass Chan Medical School (2)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (5)
4x(15)N labeled L-arginine (4)
N6 (2)
N6-dimethyl-L-lysine (2)
Not available (1)

Study type

Transcription profiling by array (279)
RNA-seq of coding RNA (48)
ChIP-seq (27)
Comparative genomic hybridization by array (21)
Unknown experiment type (20)
Methylation profiling by array (13)
Transcription profiling by RT-PCR (9)
ChIP-chip by tiling array (8)
Genotyping by array (7)
Other (7)
Methylation profiling by high throughput sequencing (6)
ChIP-chip by array (5)
RNA-seq of non coding RNA (5)
DNA-seq (4)
Transcription profiling by SAGE (3)
Cell line - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
MicroRNA profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (1593)
2025 (1562)
2023 (1481)
2021 (1405)
2024 (1398)
2020 (1065)
2019 (833)
2018 (752)
2017 (634)
2016 (546)
2015 (383)
2014 (300)
2013 (266)
2012 (212)
2026 (209)
2011 (172)
2010 (161)
2009 (93)
2008 (86)
2007 (65)
2005 (38)
2006 (33)
2004 (20)
2002 (11)
2000 (8)
2003 (7)
2001 (5)
1998 (5)
1997 (2)
1999 (1)

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Steady state isotope tracing in C. elegans (GC-MS analyses)

The metabolic network, composed of thousands of metabolic reactions, is essential for any organism. Despite its importance, a systems level understanding of how metabolic network is wired by reactions that carry flux in unperturbed condition and rewired by transcriptionally activating or repressi...

2024-12-03 | MTBLS11742 | MetaboLights

Steady state isotope tracing in C. elegans (LC-MS analyses)

2024-12-03 | MTBLS11741 | MetaboLights

Extending the coverage of Lys-C/trypsin-based bottom-up proteomics using cysteine S-aminoethylation

In this study, S-aminoethylation of Cys (AE-Cys) was carried out with 2-bromoethylamine to form pseudo-Lys, which was then digested with Lys-C or trypsin to improve proteome coverage in bottom-up proteomics. A model study with bovine serum albumin showed that the C-terminal side of Cys was successfu...

ORGANISM(S): Homo Sapiens (human) Bos Taurus

2023-09-27 | PXD045433 | JPOST Repository

C-Myb+ erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages

Although classified as hematopoietic cells, tissue-resident macrophages are selfrenewing and maintained independently of adult hematopoiesis. While most macrophages originate from embryonic precursors that seed tissues prior to birth, their exact origin is unknown. Using an in utero macrophage deple...

ORGANISM(S): Mus musculus

2015-04-23 | E-GEOD-66970 | biostudies-arrayexpress

Lamin A/C deficiency reduces circulating tumor cell resistance to fluid shear stress.

Not available

S-EPMC4725441 | biostudies-literature

Transcription profiling of C. elegans daf-19(+) and daf-19(-) mutants

By screening for genes possessing canonical X-box sequences in promoters of three Caenorhabditis species, namely C. elegans, C. briggsae and C. remanei, we identified 93 genes (including known X-box regulated genes) that encode putative components of ciliated neurons in C. elegans and are subject to...

ORGANISM(S): Caenorhabditis elegans

2008-06-14 | E-GEOD-6563 | biostudies-arrayexpress

Copper(ii)-catalyzed synthesis of multisubstituted indoles through sequential Chan-Lam and cross-dehydrogenative coupling reactions.

Not available

S-EPMC9055228 | biostudies-literature

Effect of multifunctional cationic polymer coatings on mitigation of broad microbial pathogens.

Not available

S-EPMC11370243 | biostudies-literature

Autocatalytic photoredox Chan-Lam coupling of free diaryl sulfoximines with arylboronic acids.

Not available

S-EPMC7876119 | biostudies-literature

Effect of mutated dhgd-1(tm6671) on C. elegans metabolism