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TranscriptomicsMolecular patterns in human ulcerative colitis and correlation with response to infliximab
Background & Aims. As a T cell-mediated disease of the colonic epithelium, ulcerative colitis (UC) is likely to share pathogenic elements with other T cell-mediated inflammatory diseases. Recently we showed T cell-mediated rejection of kidney and heart transplants share large scale molecular changes...
ORGANISM(S): Homo sapiens 
2014-12-22 | E-GEOD-51785 | biostudies-arrayexpress
TranscriptomicsCoordinated regulation of synthesis and stability of RNA during the acute TNF-induced proinflammatory response
Steady-state gene expression is a coordination of synthesis and decay of RNA through epigenetic regulation, transcription factors, miRNAs, and RNA-binding proteins. Here, we present Bru-Seq and BruChase-Seq to assess genome-wide changes to RNA synthesis and stability in human fibroblasts at homeosta...
ORGANISM(S): Homo sapiens 
2013-01-29 | E-GEOD-43440 | biostudies-arrayexpress
TranscriptomicsMouse Exons
Exon tiling array encompassing 837,251 probes across the mouse genome. 12 tissue pools. Composition of the 12 mRNA pools analyzed (mRNA per array hybridization): 1- Heart (2 microgram), Skeletal muscle (2 microgram) 2- Liver (2 microgram) 3- Whole brain (1.5 microgram), Cerebellum (0.48 micr...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-3047 | biostudies-arrayexpress
ProteomicsCarafe enables high quality in silico spectral library generation for data-independent acquisition proteomics
Data-independent acquisition (DIA)-based mass spectrometry is becoming an increasingly popular mass spectrometry acquisition strategy for carrying out quantitative proteomics experiments. Most of the popular DIA search engines make use of in silico generated spectral libraries. However, the generati...
ORGANISM(S): Homo Sapiens Saccharomyces Cerevisiae 
2025-11-09 | PXD056793 | panorama
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