Chang Kim Sun S

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Unknown (226)
Transcriptomics (8)
Genomics (3)
Metabolomics (3)
Proteomics (2)

Organisms

Homo sapiens (6)
Mus musculus (4)
Aspergillus nidulans (1)
Populus trichocarpa (1)
Bos taurus (1)

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biostudies-arrayexpress (8)
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pride (2)

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Cell culture (2)
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Disease

Parkinson's disease (1)

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Mass spectrometry (3)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Agilent 7890A GC-LECO Pegasus HT TOFMS (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

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2015 (3)
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CHEBI ID

CHEBI:15741 (3)
CHEBI:15940 (3)
CHEBI:16865 (3)
CHEBI:17497 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:33508 (3)
CHEBI:10072 (2)
CHEBI:15318 (2)
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CHEBI:15551 (2)
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CHEBI:15956 (2)
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CHEBI:16634 (2)
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CHEBI:16704 (2)
CHEBI:16708 (2)

Metabolite Name

Citric acid (3)
Glycolic acid (3)
Nicotinic acid (3)
Succinic acid (3)
2-Ketobutyric acid (2)
2-Methylglutaric acid (2)
3-Hydroxybutyric acid (2)
4-Hydroxyphenylpyruvic acid (2)
Adenine (2)
Adenosine (2)
Alanine (2)
Biotin (2)
Citraconic acid (2)
Cytidine (2)
Dodecanedioic acid (2)
Glutamic acid (2)
Glyceric acid (2)
Hippuric acid (2)
Hypoxanthine (2)
Inosine (2)
L-Arginine (2)
L-Histidine (2)
L-Lactic acid (2)
L-Methionine (2)
L-Phenylalanine (2)
L-Tyrosine (2)
Leucine (2)
Maleic acid (2)
Malic acid (2)
Mannitol (2)

Study type

RNA-seq of coding RNA (4)
Transcription profiling by array (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)

Release Date

2018 (39)
2020 (30)
2025 (19)
2023 (19)
2022 (18)
2021 (18)
2015 (15)
2024 (15)
2017 (12)
2016 (11)
2014 (7)
2019 (6)
2011 (5)
2012 (4)
2026 (4)
2013 (4)
2009 (3)
2008 (3)
2010 (1)
2004 (1)

Lab affiliation

Associate Professor (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, S. Korea School of Biological Sciences, Seoul National University, Seoul 08826, S. Korea (1)

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Epigenetic resetting in the Parkinson's disease entail histone modification remodeling.

Parkinson's disease (PD) is a progressive neurodegenerative disorder characterized by the loss of dopaminergic neurons (DN) in the substantia nigra and disrupted cellular maintenance. Here, we demonstrate that NDST3-mediated epigenetic reprogramming halts neuronal degeneration and restores motor...

ORGANISM(S): Homo sapiens (Human)

2026-03-16 | PXD067971 | Pride

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

Laccases were proposed to catalyze the oxidative polymerization of monolignols. We identified 49 laccase gene models in Populus trichocarpa, of which 29 were predicted to be targets of ptr-miR397a. We overexpressed Ptr-MIR397a in transgenic P. trichocarpa. In each of all 9 transgenic lines tested, 1...

ORGANISM(S): Populus trichocarpa

2014-01-17 | E-GEOD-54153 | biostudies-arrayexpress

An Integrated Biochemical, Proteomics, and Metabolomics Approach for Supporting Medicinal Value of Panax ginseng Fruits (GC-MS assay)

Panax ginseng roots are well known for their medicinal properties and have been used in Korean and Chinese traditional medicines for 1000s of years. However, the medicinal value of P. ginseng fruits remain poorly characterized. Using gas chromatography-time of flight mass spectrometry (GC-TOF MS), 6...

2016-11-18 | MTBLS350 | MetaboLights

whole exome sequencing of Korean hepatocellular carcinomas

Data Access Committee EGAC00001000329

EGAC00001000329 | EGA

Gene Expression Defines Natural Changes in Mammalian Lifespan

Mammals differ more than hundred fold in maximum lifespan, which can be altered in either direction during evolution, but the molecular basis for natural changes in longevity is not understood. Divergent evolution of mammals also led to extensive changes in gene expression within and between lineage...

ORGANISM(S): Bos taurus

2015-02-17 | E-GEOD-43013 | biostudies-arrayexpress

Dual Functions of V/SiOx/AlOy/p++Si Device as Selector and Memory.

Not available

S-EPMC6107449 | biostudies-literature

Expression data from MDSCs at different time points during tumor progression

Myeloid-derived suppressor cells (MDSCs) are increased by tumor-derived factors and suppress anti-tumor immunity. MDSCs obtained at a late time point after tumor injection had stronger suppressive activity than MDSCs obtained at an early time point, as measured by T cell proliferation assays. To fin...

ORGANISM(S): Mus musculus

2012-03-29 | E-GEOD-35398 | biostudies-arrayexpress

Deciphering genes associated with diffuse large B-cell lymphoma with lymphomatous effusions: A mutational accumulation scoring approach.

Not available

S-EPMC8504051 | biostudies-literature

Metabolomic analysis reveals a differential adaptation process of the larval stages of Anisakis simplex to the host environment

Anisakis simplex are parasitic nematodes that cause anisakiasis. The possibility of infection with this parasite is through consumption of raw or undercooked fish products. A. simplex infections are often misdiagnosed, especially in subclinical cases that do not present with typ...

2023-07-08 | MTBLS6458 | MetaboLights

Major Patterns of B Cell Gene Expression Changes in Response to Short-Term Stimulation with 33 Single Ligands

We examined the major patterns of changes in gene expression in mouse splenic B cells in response to stimulation with 33 single ligands for 0.5, 1, 2, and 4 h. We found that ligands known to directly induce or costimulate proliferation, namely, anti-IgM (anti-Ig), anti-CD40 (CD40L), LPS, and, to a l...