Chang Lee L - OmicsDI

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Unknown (1668)
Transcriptomics (152)
Proteomics (32)
Genomics (22)
Metabolomics (5)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (98)
Mus musculus (28)
Corynebacterium glutamicum ATCC 13032 (23)
Corynebacterium glutamicum (19)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (4)
Drosophila melanogaster (3)
Escherichia coli (3)
Sus scrofa (2)
Rattus norvegicus (2)
Picea sitchensis (1)
Bos taurus (1)
Pseudomonas aeruginosa (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Akkermansia muciniphila ATCC BAA-835 (1)
Mycobacterium tuberculosis H37Rv (1)

Repository

biostudies-arrayexpress (159)
pride (20)
EGA (15)
MassIVE (9)
MetaboLights (5)
jPOST (2)
dbGaP (1)
PanoramaPublic (1)

Tissue

Cell culture (7)
Permanent cell line cell (2)
T cell (2)
Adipose tissue (1)
Brain (1)
Colon (1)
Epithelial cell (1)
Esophageal squamous epithelium (1)
Fibroblast (1)
HEK-293 cell (1)
Heart (1)
Kidney (1)
Liver (1)
Lung (1)
Lymph node (1)
Nerve cord (1)
Pancreas (1)
Pancreatic islet (1)
Spleen (1)
Testis (1)
Type B pancreatic cell (1)

Disease

Colon carcinoma (1)
Acute promyelocytic leukemia (1)
Colorectal adenocarcinoma (1)
Esophageal cancer (1)
Insulinoma (1)
Pancreatic ductal adenocarcinoma (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (7)
Mass spectrometry (5)
Bottom-up proteomics (4)
Gel-based experiment (4)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 1500 (5)
Illumina MiSeq (4)
Illumina HiSeq 2000 (4)
NextSeq 550 (2)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Velos (2)
Q Exactive (2)
454 GS 20 (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 240 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
TripleTOF 6600 (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)

Publication Date

2012 (26)
2011 (23)
2015 (20)
2014 (17)
2010 (17)
2013 (16)
2016 (14)
2026 (8)
2021 (8)
2024 (7)
2022 (7)
2023 (5)
2008 (5)
2018 (4)
2017 (4)
2019 (3)
2009 (3)
2020 (2)
2004 (2)
2007 (1)
2006 (1)
2003 (1)
2025 (1)

CHEBI ID

CHEBI:26078 (4)
CHEBI:16737 (3)
CHEBI:17151 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:30746 (3)
CHEBI:30769 (3)
CHEBI:33508 (3)
CHEBI:35280 (3)
CHEBI:46961 (3)
CHEBI:50129 (3)
CHEBI:7916 (3)
CHEBI:83053 (3)
CHEBI:111517 (2)
CHEBI:116314 (2)
CHEBI:137271 (2)
CHEBI:142273 (2)
CHEBI:14336 (2)
CHEBI:15346 (2)
CHEBI:15351 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15674 (2)
CHEBI:15682 (2)
CHEBI:15724 (2)
CHEBI:15741 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:15901 (2)

Metabolite Name

Beta-alanine (2)
Coenzyme A (2)
Creatinine (2)
Fructose (2)
Glycine (2)
Hypoxanthine (2)
L-glutamic acid (2)
L-histidine (2)
L-lysine (2)
Myo-inositol (2)
Pseudouridine (2)
Ribose (2)
Uracil (2)
Xanthosine (2)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (21)
Unknown experiment type (9)
Methylation profiling by array (7)
ChIP-chip by array (5)
ChIP-chip by tiling array (4)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
Transcription profiling by SAGE (2)
High-throughput sequencing (2)
RIP-seq (2)
DNA-seq (2)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (196)
2022 (188)
2025 (180)
2023 (176)
2024 (151)
2020 (127)
2018 (107)
2015 (103)
2019 (99)
2016 (95)
2014 (78)
2017 (64)
2013 (54)
2012 (54)
2011 (50)
2010 (32)
2026 (27)
2009 (16)
2008 (15)
2007 (3)
2006 (3)
2004 (3)
2005 (3)
2003 (2)
2002 (1)

Lab affiliation

Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (4)
Roswell Park Cancer Center Buffalo, NY, USA (2)
Associate Professor (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (South Korea) (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Group for Biometrology, Korea Research Institute of Standards and Science (KRISS), Daejeon, 34113, Republic of Korea (1)
Harold C. Simmons Comprehensive Cancer Center, UT Southwestern Medical Center, Dallas, TX, USA (1)
Lineberger Comprehensive Cancer Center Department of Pharmacology UNC Chapel Hill Chapel Hill NC USA (1)
Robert H. Lurie Comprehensive Cancer Center of Northwestern University, Chicago, IL, 60611, USA Division of Hematology-Oncology, Department of Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
UCSF (1)
Univeristy of California, San Francisco (1)

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Comparative LC/MS-based profiling of L-arginine producing, canavanine resistant Corynebacterium glutamicum strain ATCC 21831 and type strain ATCC 13032

Corynebacterium glutamicum strain ATCC 21831 is a producer of L-arginine that was created by random mutagenesis. It is resistant to the arginine structural analogue canavanine. In order to identify potential bottlenecks in the biosynthetic pathway that leads to this industrially important amino acid...

2015-10-06 | MTBLS128 | MetaboLights

L-Glutamine metabolism and its regulation in C. glutamicum

Corynebacterium glutamicum, a gram-positive soil bacterium used for the industrial production of amino acids such as L-glutamate and L-lysine, is able to use a number of different nitrogen sources, such as ammonium, urea, or creatinine. In this communication, we show that L-glutamine serves as an ex...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2010-10-05 | E-GEOD-19779 | biostudies-arrayexpress

Metabolic engineering of Corynebacterium glutamicum for L-arginine production

Metabolically engineered Corynebacterium glutamicum strains were constructed for the enhanced production of L-arginine, and their gene expression profiles were investigated Gene expression profiles of two C. glutamicum strains AR2 and AR6 were examined for the 3043 genes twice.

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2013-11-26 | E-GEOD-52737 | biostudies-arrayexpress

Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates

Background. Many microbial hosts used for the rapid discovery and development of metabolic pathways can have sensitivities to final products and process reagents. Isopentenol, a biogasoline candidate, has an established heterologous gene pathway but is toxic to many microbial hosts. Reagents used in...

ORGANISM(S): Corynebacterium Glutamicum Atcc 13032

PXD012293 | panorama

Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Not available

S-EPMC6704446 | biostudies-literature

The Characteristics and Mortality of Chinese Herbal Medicine Users among Newly Diagnosed Inoperable Huge Hepatocellular Carcinoma (≥10 cm) Patients: A Retrospective Cohort Study with Exploration of Core Herbs.

Not available

S-EPMC9564474 | biostudies-literature

Chang - Frankia sp. CcI3 - Nitrogen limitation

Effect of nitrogen limitation on the gene expression of Frankia sp. CcI3

ORGANISM(S): Frankia sp. Ccl3

2013-10-03 | E-MEXP-3620 | biostudies-arrayexpress

Engineering Corynebacterium glutamicum for fast production of lysine and pipecolic acid

The Gram-positive soil bacterium Corynebacterium glutamicum is widely used in industrial fermentative processes for the production of amino acids. The world production of L-lysine has surpassed 2 million tons per year. Glucose is taken up into the C. glutamicum cell by the phosphotransferase system ...

ORGANISM(S): Corynebacterium glutamicum

2016-03-30 | E-GEOD-79690 | biostudies-arrayexpress

C1 metabolism in Corynebacterium glutamicum: an endogenous pathway for oxidation of methanol to carbon dioxide

Methanol is considered as an interesting carbon source in biobased microbial production processes. As Corynebacterium glutamicum is an important host in industrial biotechnology, in particular for amino acid production, we performed studies on the response of this organism to methanol. C. glutamicum...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2013-09-27 | E-GEOD-49936 | biostudies-arrayexpress

Eliciting unnatural immune responses by activating cryptic epitopes in viral antigens.

Not available

S-EPMC6103170 | biostudies-literature

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