Chen Fa F - OmicsDI

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Unknown (505)
Transcriptomics (139)
Proteomics (107)
Genomics (42)
Metabolomics (18)
Multiomics (1)

Organisms

Homo sapiens (139)
Mus musculus (50)
Rattus norvegicus (38)
Arabidopsis thaliana (13)
Saccharomyces cerevisiae (3)
Drosophila melanogaster (3)
Mustela putorius furo (2)
Mycobacterium avium subsp. paratuberculosis (2)
Rattus rattus (2)
Nicotiana benthamiana (2)
Oryza sativa (2)
Ketogulonicigenium vulgare (1)
Drosophila mojavensis (1)
Trichoderma reesei QM6a (1)
Pan troglodytes (1)
Brassica napus (1)
Helicobacter pylori (1)
Bos taurus (1)
Glycine max (1)
Caenorhabditis elegans (1)
Gallus gallus (1)
Tetrahymena (1)
Aeromonas veronii bv. sobria (1)
Bat coronavirus RaTG13 (1)
Bivalvia (1)
Coffea arabica (1)
Coffea canephora (1)
Coffea eugenioides (1)
Cupriavidus necator H16 (1)
Danio rerio (1)

Repository

biostudies-arrayexpress (144)
pride (102)
EGA (38)
MetaboLights (18)
MassIVE (3)
iProX (1)
jPOST (1)

Tissue

Cell culture (29)
Epithelial cell (13)
Liver (12)
Blood plasma (4)
Leaf (4)
Plant cell (4)
Fibroblast (3)
Spleen (3)
Testis (3)
B cell (2)
Blood cell (2)
Cell suspension culture (2)
Hepatocyte (2)
Primary cell (2)
Adipose tissue (1)
Appressorium (1)
Blood serum (1)
Bone marrow (1)
Brain (1)
Breast cancer cell line (1)
Colon (1)
Conidium (1)
Connective tissue (1)
Early embryonic cell (1)
Embryo (1)
Endosperm (1)
Follicular fluid (1)
HEK-293T cell (1)
Haploid cell (1)
Heart (1)

Disease

Breast cancer (5)
Disease free (5)
Acute leukemia (3)
Hepatocellular carcinoma (2)
Malignant neoplasm of ovary (2)
Dukes D primary colon cancer (1)
Pancreatic tumor (1)
Colon cancer metastasis (1)
None- acute control (1)
Benign adenoma (1)
None- Acute Control (1)
Normal (1)
COVID-19 (1)
Cervix carcinoma (1)
Colon cancer (1)
Liver cancer (1)
Lymphoma (1)
Melanoma (1)
Osteosarcoma (1)
Pancreatic ductal adenocarcinoma (1)
Sarcoma (1)
Type 2 diabetes mellitus (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (102)
Shotgun proteomics (51)
Mass spectrometry (17)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (11)
Gel-based experiment (10)
SWATH MS (7)
Data-independent acquisition (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
All-ion fragmentation (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
DiaPASEF (1)
Proteogenomics (1)
RNA mass spectrometry (1)

Instrument Platform

Q Exactive (8)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Axon- GenePix4000B (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
TimsTOF (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
TripleTOF 5600 (AB Sciex) (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2005 (42)
2025 (20)
2022 (19)
2012 (16)
2021 (16)
2026 (15)
2020 (14)
2024 (14)
2013 (12)
2015 (11)
2011 (11)
2023 (10)
2019 (10)
2010 (10)
2014 (8)
2007 (7)
2006 (7)
2008 (6)
2009 (5)
2018 (5)
2016 (4)
2017 (4)
2004 (1)
2003 (1)

CHEBI ID

CHEBI:28044 (9)
CHEBI:15999 (8)
CHEBI:16708 (8)
CHEBI:17154 (8)
CHEBI:17368 (8)
CHEBI:17596 (8)
CHEBI:17750 (8)
CHEBI:17802 (8)
CHEBI:24813 (8)
CHEBI:27266 (8)
CHEBI:27897 (8)
CHEBI:15318 (7)
CHEBI:15354 (7)
CHEBI:15428 (7)
CHEBI:15676 (7)
CHEBI:15728 (7)
CHEBI:16010 (7)
CHEBI:16020 (7)
CHEBI:16530 (7)
CHEBI:16566 (7)
CHEBI:16610 (7)
CHEBI:16704 (7)
CHEBI:16750 (7)
CHEBI:16811 (7)
CHEBI:17126 (7)
CHEBI:17533 (7)
CHEBI:17752 (7)
CHEBI:17768 (7)
CHEBI:18012 (7)
CHEBI:18132 (7)

Metabolite Name

N-acetylglutamine (7)
1-linoleoyl-GPC (18:2) (6)
1-methylhistidine (6)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1)* (6)
1-palmitoyl-GPC (16:0) (6)
1-palmitoyl-GPE (16:0) (6)
1-stearoyl-2-arachidonoyl-GPC (18:0/20:4) (6)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (6)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (6)
2-aminoadipate (6)
2-hydroxy-3-methylvalerate (6)
3-hydroxy-3-methylglutarate (6)
3-methyl-2-oxobutyrate (6)
3-methyl-2-oxovalerate (6)
3-methylhistidine (6)
4-guanidinobutanoate (6)
4-hydroxyphenylpyruvate (6)
4-methyl-2-oxopentanoate (6)
5-oxoproline (6)
7-methylguanine (6)
N-acetylalanine (6)
N-acetylasparagine (6)
N-acetylglutamate (6)
N-acetylglycine (6)
N-acetylhistidine (6)
N-acetylleucine (6)
N-acetylmethionine (6)
N-acetylphenylalanine (6)
N-acetylputrescine (6)
N-acetylserine (6)

Modification

Not available (1)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
Genotyping by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (68)
2021 (64)
2025 (63)
2023 (57)
2024 (57)
2005 (42)
2017 (35)
2015 (31)
2016 (29)
2018 (27)
2013 (26)
2020 (24)
2012 (23)
2019 (21)
2014 (19)
2011 (15)
2010 (11)
2008 (9)
2006 (8)
2009 (7)
2007 (7)
2026 (4)
2004 (1)
2003 (1)

Lab affiliation

Guangzhou Medical University (3)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden, 2-Science for Life Laboratory, Stockholm, Sweden (1)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
Agronomy College, Henan Agricultural University, China (1)
Assistant Professor, Dept of Obstetrics & Gynaecology, Faculty of Medicine, The Ubiversity of Hong Kong (1)
Beijing Institute of Hepatology, Beijing You’an Hospital, Capital Medical University, Beijing 100069, China (1)
Beijing proteome research center, Beijing, China (1)
Bioinformatics Core, Weill Cornell Medicine-Qatar (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Capital Medical University (1)
Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
College of Animal Science and Technology, China Agricultural University.College of Animal Science and Technology, China Agricultural University. (1)
College of Life Sciences, Hunan Normal University (1)
College of Veterinary Medicine, China Agricultural University, Beijing 100193, China (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin (1)
Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158, USA (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, United States (1)
Department of Clinical Laboratory, Sun Yat-Sen University Cancer Center, Guangzhou 510060, P. R. China. (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Laboratory Medicine, UCSF (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University; Key Laboratory of Carcinogenesis and Cancer Invasion of Ministry of Education, Key Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China (1)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)

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Bright and sensitive ratiometric fluorescent probe enabling endogenous FA imaging and mechanistic exploration of indirect oxidative damage due to FA in various living systems.

Not available

S-EPMC5674201 | biostudies-literature

An Embedding 2D/3D Heterostructure Enables High-Performance FA-Alloyed Flexible Perovskite Solar Cells with Efficiency over 20.

Not available

S-EPMC8596135 | biostudies-literature

Preparation of FA-targeted magnetic nanocomposites co-loading TFPI-2 plasmid and cis-platinum and its targeted therapy effects on nasopharyngeal carcinoma.

Not available

S-EPMC8100641 | biostudies-literature

Macrophage SH3GLB1 is required for Rab7-1 mediated mitophagy in inflammation during acute lung injury

Acute lung injury (ALI) accompanied by an inflammatory response is an important complication after drowning. Macrophage activation and polarization are implicated in the inflammatory process of lipopolysaccharide (LPS)-induced ALI (LPS-ALI), but little is known about drowning-induced ALI (drowning-A...

ORGANISM(S): Mus musculus (Mouse)

2026-02-10 | PXD073650 | Pride

First-in-class MKK4 inhibitors enhance liver regeneration and prevent liver failure

Diminished hepatocyte regeneration is a key feature of acute and chronic liver diseases and after extended liver resections, resulting in the inability to maintain or restore a sufficient functional liver mass. Therapies to restore hepatocyte regeneration are lacking, making liver transplantation...

2024-09-23 | MTBLS9434 | MetaboLights

Complex structures of Rsu1 and PINCH1 reveal a regulatory mechanism of the ILK/PINCH/Parvin complex for F-actin dynamics.

Not available

S-EPMC7909951 | biostudies-literature

pH-sensitive and folic acid-targeted MPEG-PHIS/FA-PEG-VE mixed micelles for the delivery of PTX-VE and their antitumor activity.

Not available

S-EPMC5566413 | biostudies-literature

Chen Minor et al 2023 Mass Spectrometry Data

Purified protein complexes were separated by SDS-PAGE and gel lanes divided into 3 sections (A, B and C). Samples prepared in triplicate (1, 2 and 3). A nanoElute (Bruker) was attached in line to a timsTOF Pro equipped with a CaptiveSpray Source (Bruker, Hamburg, Germany). Chromatography was conduct...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000090434 | MassIVE

Glucose-responsive, antioxidative HA-PBA-FA/EN106 hydrogel enhanced diabetic wound healing through modulation of FEM1b-FNIP1 axis and promoting angiogenesis.

Not available

S-EPMC10382778 | biostudies-literature

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

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812 Results

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