Chen Hongyu H - OmicsDI

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Proteomics (8)
Unknown (3)
Transcriptomics (2)
Other (1)
Metabolomics (1)

Organisms

Homo sapiens (3)
Bombyx mori (1)
Oryza sativa (1)
Magallana gigas (1)
Mus (1)
Mus musculus (1)
Mycobacterium tuberculosis OFXR-32 (1)

Repository

iProX (4)
pride (3)
biostudies-arrayexpress (2)
GPMDB (1)
MassIVE (1)
MetaboLights (1)

Tissue

Brain (1)
Cell suspension culture (1)
Fibroblast (1)

Disease

Not Available (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (3)
Shotgun proteomics (2)
Mass spectrometry (1)
Data-dependent acquisition (1)

Instrument Platform

Instrument (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (2)
2023 (2)
2021 (2)
2024 (2)
2025 (1)
2022 (1)
2014 (1)

Metabolite Name

((2R,3S,4S,5R,6S)-6-(2-(3-(Benzofuran-5-yl)propanoyl)-3-hydroxy-5-methylphenoxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl)methyl methyl carbonate (1)
(+)-15,16-Dihydroxyoctadecanoic acid (1)
(+)-3,4-Didehydrocoronaridine (1)
(+)-7-epi-Syringaresinol 4'-glucoside (1)
(+)-Abscisic acid (1)
(+)-Bottrospicatol (1)
(+)-cis-3,4-Dihydrophenanthrene-3,4-diol (1)
(-)-Epigallocatechin 3-p-coumaroate (1)
(-)-Fumigaclavine B (1)
(-)-Jasmonic acid (1)
(-)-Menthol (1)
(-)-alpha-5,9-Dimethyl-2-(3-furylmethyl)-2'-hydroxy-6,7-benzomorphane (1)
(-)-jasmonoyl-L-isoleucine (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(10S)-Juvenile hormone III diol (1)
(10Z,14E,16E)-10,14,16-Octadecatrien-12-ynoic acid (1)
(14alpha,17beta,20S,22R)-14,20-Epoxy-17-hydroxy-1-oxowitha-3,5,24-trienolide (1)
(16-Benzyl-5,12-dihydroxy-5,7,14-trimethyl-13-methylidene-6,18-dioxo-17-azatricyclo[9.7.0.01,15]octadeca-3,9-dien-2-yl) acetate (1)
(17E,19E,21E,23E,25E)-4,6,8,10,12,14,16,27-Octahydroxy-3-(1-hydroxyhexyl)-17,28-dimethyl-1-oxacyclooctacosa-17,19,21,23,25-pentaen-2-one (1)
(17R)-17-Ethynyl-11-methoxy-13-methyl-7,8,9,11,12,14,15,16-octahydro-6H-cyclopenta[a]phenanthrene-3,17-diol (1)
(1Ar,3S,4aS,7S,8aS)-3-[(1S,2R,3R)-3-[(2R,5S)-5,6-dimethylheptan-2-yl]-2-(2-hydroxyethyl)-2-methylcyclopentyl]-7-hydroxy-4a-methyl-2,3,5,6,7,8-hexahydro-1aH-naphtho[4,4a-b]oxiren-4-one (1)
(1E)-4-Oxobut-1-ene-1,2,4-tricarboxylate (1)
(1E,4S,5E,7R)-Germacra-1(10),5-dien-11-ol (1)
(1E,4Z,6a,8b,10a)-8-Angeloyloxy-10,15-dihydroxy-3-oxo-1,4,11(13)-germacratrien-12,6-olide (1)
(1R)-5-[2-[(1S,7As)-1-[(1S)-1-(3-hydroxy-3-methylbutoxy)ethyl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidenecyclohexane-1,3-diol (1)
(1R,2R)-2-Amino-1-(4-nitrophenyl)propane-1,3-diol (1)
(1R,2S,3S,4R)-p-Menthane-2,3-diol (1)
(1R,2S,5S,6R,9S,10S)-3,6,17,20-Tetrahydroxy-6-(2-hydroxyacetyl)-1,5-dimethylpentacyclo[11.8.0.02,10.05,9.016,21]henicosa-13,16,18,20-tetraen-15-one (1)
(1R,3R,4R,5S,6S,8x)-1-Acetoxy-8-angeloyloxy-3,4-epoxy-5-hydroxy-7(14),10-bisaboladien-2-one (1)
(1R,6R)-1,4,5,5a,6,9-Hexahydrophenazine-1,6-dicarboxylate (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA (1)

Release Date

2010 (2)
2024 (1)
2023 (1)
2017 (1)

Lab affiliation

1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Department of Neurology, Xiangya Hospital, Central South University (1)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, P. R. China. (1)

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Multiple omics reveal link between the microbiota-gut-brain axis and intracranial aneurysm rupture

Intracranial aneurysms (IAs) are benign cerebrovascular maladies characterized by pathological dilatation in the walls of intracranial arteries. However, spontaneous subarachnoid hemorrhage (SAH) resulting from aneurysm rupture poses a grave threat to the patient's life. Accumulating evidence imp...

2024-12-13 | MTBLS10263 | MetaboLights

iTRAQ-based proteomic analysis of dentate gyrus in temporal lobe epilepsy with hippocampal sclerosis

Temporal lobe epilepsy (TLE) is the most frequent type of focal epilepsy in adults, typically resistant to pharmacological treatment and mostly present with cognitive impairment and psychiatric comorbidities. The most common neuropathological hallmark in TLE patients is hippocampal sclerosis(HS). Ho...

ORGANISM(S): Homo sapiens (Human)

2021-01-18 | PXD023048 | Pride

Protective Effects of Different Molecular Weights of Purslane (Portulaca oleracea L.) Aqueous Extract on DSS-Induced Ulcerative Colitis in Mice.

Not available

S-EPMC10376347 | biostudies-literature

Molecular phylogenetics of the Ophiocordyceps sinensis-species complex lineage (Ascomycota, Hypocreales), with the discovery of new species and predictions of species distribution.

Not available

S-EPMC10858606 | biostudies-literature

SILAC-based quantitative proteomic analysis of secretome between activated and reverted hepatic stellate cells.

Data from ProteomeXchange, PXD ID: PXD000773. File: zhanghongyu_20110913_13.mzml. Published as part of . From the Abstract: {{i}} Activated hepatic stellate cell (HSC) is the main myofibroblast cell in the liver fibrosis (LF). An important characteristic of the recovery of LF is not only the apopto...

ORGANISM(S): Homo_sapiens_viruses, Human

GPM32310002866 | GPMDB

Resource Reanalysis

A scalable algorithm for structure identification of complex gene regulatory network from temporal expression data.

Not available

S-EPMC5294888 | biostudies-literature

SILAC-based Quantitative Proteomic Analysis of Secretome between Activated and Reverted Hepatic Stellate Cells

Activated hepatic stellate cell (HSC) is the main myofibroblast cell in the liver fibrosis(LF). An important characteristic of the recovery of LF is not only the apoptosis of activated HSCs but also reversal of myofibroblast-like phenotype to a quiescent-like phenotype. Understanding the changes of ...

ORGANISM(S): Homo sapiens (Human)

2014-08-11 | PXD000773 | Pride

Lx-2 activation reversion secretome

Mycobacterium tuberculosis produces D-serine under hypoxia to limit CD8+ T cell-dependent immunity in mice

Interferon (IFN)-γ-producing CD8+ T cells are involved in control of Mycobacterium tuberculosis (Mtb) infection, in part by promoting antimicrobial activities of macrophages. Whether Mtb counters these responses, particularly during the hypoxic conditions that arise within granulomas during infectio...

ORGANISM(S): Mycobacterium tuberculosis OFXR-32

2024-08-10 | PXD050258 | Pride

Mycobacterium tuberculosis d-serine rv0884c wdr24 mtorc1 cd8+ t cell

DIA-based proteomic analysis of gonads in oysters Crassostrea gigas

Triploid oysters have poor gonadal development, which can not only bring higher economic benefits but also have a potential application in the genetic containment for aquaculture. However, the key factors that influence germ cell development in triploid oysters remain unclear. In this study, data-i...

ORGANISM(S): Crassostrea Gigas

2021-08-22 | PXD028056 |

Succinyl-CoA synthetase deficiency in mouse forebrain results in hyper-succinylation with perturbed neuronal transcriptional regulation and metabolism

Lysine-succinylation is a subtype of protein acylation associated with metabolic regulation of succinyl-CoA in the TCA cycle. Deficiency of succinyl-CoA synthetase (SCS), the TCA-cycle enzyme catalyzing the reversible conversion of succinyl-CoA to succinate, leads to mitochondrial encephalomyopathy ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2022-06-21 | MSV000089697 | MassIVE

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15 Results

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