Chen Ji J - OmicsDI

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Unknown (4619)
Proteomics (108)
Genomics (32)
Transcriptomics (25)
Models (16)
Metabolomics (14)
Genomic (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (78)
Mus musculus (25)
Caenorhabditis elegans (24)
Arabidopsis thaliana (2)
Rattus norvegicus (2)
Paralichthys olivaceus (1)
Zea mays (1)
Helicobacter pylori (1)
Cronobacter sakazakii (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Mytilus coruscus (1)
Oryza sativa (1)
Prunus avium (1)
Pyricularia oryzae 70-15 (1)
Rattus rattus (1)
Artemisia annua (1)
Beta vulgaris subsp. vulgaris (1)
Cairina moschata (1)
Conchocele bisecta (1)
Cricetidae (1)
Glycine max (1)
Mycobacterium tuberculosis OFXR-32 (1)
Mycoplasmoides pneumoniae M129 (1)
Pasteurella multocida subsp. multocida (1)
Pichia kudriavzevii (1)
Saccharomyces cerevisiae (1)
human gut metagenome (1)
mouse gut metagenome (1)

Repository

pride (60)
biostudies-arrayexpress (49)
iProX (36)
BioModels (16)
MetaboLights (14)
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EGA (8)
dbGaP (2)
PAXDB (2)
GPMDB (1)
PanoramaPublic (1)

Tissue

Cell culture (13)
Early embryonic cell (7)
Leaf (3)
Smooth muscle cell (3)
Blood serum (2)
Brain (2)
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Embryo (1)
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Flower bud (1)
Gill (1)
Mammary gland tumor cell (1)
T-cell acute lymphoblastic leukemia cell (1)

Disease

Disease free (6)
Not Available (1)
Acute leukemia (1)
Aortic dissection (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Malaria (1)
Malignant neoplasm of ovary (1)
Multidrug-resistant tuberculosis (1)
Stomach cancer (1)
Thyroid cancer (1)
Type 2 diabetes mellitus (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (34)
Mass spectrometry (14)
Bottom-up proteomics (12)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
SRM/MRM (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
DiaPASEF (1)
Immunopeptidomics (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (7)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive (2)
TripleTOF 5600 (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - hilic (2)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
Illumina HiSeq 2500 (1)
Instrument (1)
LTQ Orbitrap Velos (1)
LTQ Velos (1)
Orbitrap Fusion Lumos (1)
TripleTOF 6600 (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Quattro micro API (Waters) (1)

Publication Date

2024 (24)
2021 (24)
2011 (22)
2023 (22)
2022 (21)
2025 (12)
2017 (9)
2016 (6)
2009 (6)
2018 (6)
2020 (6)
2026 (5)
2010 (4)
2019 (4)
2015 (3)
2014 (3)
2012 (2)
2006 (2)
2005 (2)
2013 (1)
2008 (1)
2007 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

CHEBI ID

CHEBI:104012 (13)
CHEBI:104362 (13)
CHEBI:104873 (13)
CHEBI:10727 (13)
CHEBI:1109 (13)
CHEBI:11230 (13)
CHEBI:11561 (13)
CHEBI:11596 (13)
CHEBI:11812 (13)
CHEBI:11814 (13)
CHEBI:11851 (13)
CHEBI:12071 (13)
CHEBI:12427 (13)
CHEBI:128769 (13)
CHEBI:12936 (13)
CHEBI:12952 (13)
CHEBI:132146 (13)
CHEBI:132511 (13)
CHEBI:132515 (13)
CHEBI:132537 (13)
CHEBI:132957 (13)
CHEBI:134127 (13)
CHEBI:134128 (13)
CHEBI:134129 (13)
CHEBI:134130 (13)
CHEBI:134541 (13)
CHEBI:134592 (13)
CHEBI:134594 (13)
CHEBI:134637 (13)
CHEBI:136147 (13)

Metabolite Name

Acetylcholine (3)
Betaine (3)
Choline (3)
Guanine (3)
Homovanillic acid (3)
L-Arginine (3)
L-Isoleucine (3)
L-Phenylalanine (3)
L-Tryptophan (3)
Mannitol (3)
Sphinganine (3)
Sphingosine (3)
Suberic acid (3)
Sucrose (3)
(S)-(-)-Perillyl alcohol (2)
(S)-Norcoclaurine (2)
2,5-Dimethylbenzaldehyde (2)
3-Dehydro-2-deoxyecdysone (2)
4-Pyridoxic acid (2)
4-formyl Indole (2)
5-Hydroxyindoleacetic acid (2)
Acetylphosphate (2)
Adenine (2)
Adenosine (2)
Aminocarb (2)
Anserine (2)
Aspartame (2)
Benzoate (2)
Beta-Tyrosine (2)
Butyric acid (2)

IsPrivate

False (16)

Submitter Keywords

FROG (1)

Modelling Approach

Constraint-based model (13)
Ordinary differential equation model (3)

Study type

ChIP-seq (24)
Transcription profiling by array (15)
RNA-seq of coding RNA (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (1)
ATAC-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (657)
2022 (630)
2024 (553)
2023 (542)
2021 (475)
2020 (353)
2019 (231)
2018 (225)
2017 (194)
2016 (178)
2015 (149)
2026 (103)
2014 (100)
2013 (77)
2011 (66)
2012 (58)
2010 (28)
2009 (21)
2008 (14)
2006 (5)
2005 (5)
2007 (2)
2004 (2)

Lab affiliation

Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Nanjing Medical University (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Center for Translational Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, 510080, P. R. China. (1)
Centre for Genomic Regulation, CRG (1)
Dalian Institute of Chemcial and Physics, China (1)
Dalian Institute of Chemical and Physics, Chinese Academy of Sciences (1)
Department of Biology, Brain Research Center, Southern University of Science and Technology (1)
Department of General Practice, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University (1)
Department of Molecular Biology, Cristea Lab, Princeton University, Princeton, NJ, US (lab head) (1)
Department of Obstetrics and Gynecology, Guangzhou Women and Children’s Medical Center, Guangzhou Medical University, Guangzhou, China (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, and State Key Laboratory of Oncogenes and Related Genes and Chinese Academy of Medical Sciences Research Unit (NO.2019RU043), Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Guangdong Institute of Cardiovascular Diseases (1)
Guizhou University (1)
Harvard Department of Stem Cell and Regenerative Biology Cambridge, MA 02138, USA (1)
IMP, Vienna Biocenter, Vienna, Austria (1)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (1)
Institute of Oceanology, Chinese Academy of Sciences (1)
Institute of Pediatric Research, Children's Hospital of Soochow University, Suzhou, China. (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
JNU university (1)
Joint International Research Laboratory of Metabolic & Developmental Sciences, Key Laboratory of Urban Agriculture (South) Ministry of Agriculture, Plant Biotechnology Research Center, Fudan-SJTU-Nottingham Plant Biotechnology R&D Center, School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China (1)

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Phase I Study of Single-Agent AZD1775 (MK-1775), a Wee1 Kinase Inhibitor, in Patients With Refractory Solid Tumors.

Not available

S-EPMC4606059 | biostudies-literature

Du-Huo-Ji-Sheng-Tang Attenuates Inflammation of TNF-Tg Mice Related to Promoting Lymphatic Drainage Function.

Not available

S-EPMC4863122 | biostudies-literature

Phase I trial of lenalidomide and CCI-779 in patients with relapsed multiple myeloma: evidence for lenalidomide-CCI-779 interaction via P-glycoprotein.

Not available

S-EPMC3164245 | biostudies-literature

Transcription profiling of human liver cancer samples

Experiments used in Figure one of the HCC paper by Chen X, et al.

ORGANISM(S): Homo sapiens

2008-03-12 | E-SMDB-1164 | biostudies-arrayexpress

Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Clinical and epidemiological features of Heart-Hand Syndrome: a hospital-based study in China.

Not available

S-EPMC5981449 | biostudies-literature

Isolation and molecular characterization of subgroup J avian leukosis virus in native chicken breeds of China during 2022-2025.

Not available

S-EPMC12536225 | biostudies-literature

Development and application of a reverse-transcription recombinase-aided amplification assay for subgroup J Avian leukosis virus.

Not available

S-EPMC8889409 | biostudies-literature

Role of gga-miR-221 and gga-miR-222 during Tumour Formation in Chickens Infected by Subgroup J Avian Leukosis Virus.

Not available

S-EPMC4690879 | biostudies-literature

Jasmonate-mediated stomatal closure under elevated CO2 revealed by time-resolved metabolomics

Foliar stomatal movements are critical for regulating plant water loss and gas exchange. Elevated carbon dioxide (CO2) levels are known to induce stomatal closure. However, the current knowledge on CO2 signal transduction in stomatal guard cells is limited. Here we report metabolomic responses of Br...

2017-04-25 | MTBLS312 | MetaboLights

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4817 Results

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