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ProteomicsUniversal plant phosphoproteomics workflow and its application to tomato signaling in response to cold stress
Phosphorylation-mediated signaling transduction plays a crucial role in the regulation of plant defense mechanisms against environmental stresses. To address the high complexity and dynamic range of plant proteomes and phosphoproteomes, we present a universal sample preparation procedure that facili...
ORGANISM(S): Solanum Pimpinellifolium Solanum Lycopersicum 
2018-09-20 | PXD010310 | JPOST Repository
UnknownLung cancer diagnosis through extracellular vesicle analysis using label-free surface-enhanced Raman spectroscopy coupled with machine learning.
Not available
S-EPMC12315814 | biostudies-literature
TranscriptomicsHigh-throughput RNA sequencing analysis of WT, rdm16-2 and sta1 mutants
Using Illumina paired-end RNA-seq technology to examine the genome-wide gene expression and intron-retention events in WT, rdm16-2 and sta1 RNA-seq analysis of 4-week-old leaves of WT, rdm16-2 and sta1 mutants
ORGANISM(S): Arabidopsis thaliana 
2013-02-26 | E-GEOD-44635 | biostudies-arrayexpress
GenomicsWhole genome bisulfite sequencing of idm1, rdd, ros1 mutants and Col-0 WT
Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in ros1, idm1, and rdd mutants and identify hypermethylated regions comparing to wild type Arabidopsis plants. Examination of 3 different mutants' methylome. 8 samples (3 mutants, 1 WT, each has two b...
ORGANISM(S): Arabidopsis thaliana 
2012-06-17 | E-GEOD-33071 | biostudies-arrayexpress
GenomicsWhole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type
Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in rdm16ros1, ros1, nrpd1ros1 mutants and examine the effect of RDM16 on DNA methylation 4 samples examined: C24 wild type with RD29A-LUC transgene, rdm16ros1 double mutant, ros1 mutant, nrpd1ros1 mut...
ORGANISM(S): Arabidopsis thaliana 
2013-09-27 | E-GEOD-44417 | biostudies-arrayexpress
ProteomicsA histone H3K4me1-specific binding protein is required for siRNA accumulation and DNA methylation at a subset of loci targeted by RNA-directed DNA methylation
The RDM15 genomic sequence was fused in frame to the 3xFLAG tag and 3xMYC tag, and the fused sequences were inserted into the pCambia1305 backbone and were transformed into Arabidopsis plants, respectively. A 5-g quantity of flower tissue was harvested from transgenic plants and ground in liquid nit...
ORGANISM(S): Arabidopsis Thaliana 
2021-04-01 | PXD025147 |
UnknownIntegrative annotation of variants from 1092 humans: application to cancer genomics.
Not available
S-EPMC3947637 | biostudies-literature
UnknownA global reference for human genetic variation.
Not available
S-EPMC4750478 | biostudies-literature
UnknownIntegrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.
Not available
S-EPMC4338501 | biostudies-literature
UnknownThe functional spectrum of low-frequency coding variation.
Not available
S-EPMC3308047 | biostudies-literature
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