Chen Xi X - OmicsDI

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Unknown (1290)
Transcriptomics (173)
Proteomics (75)
Genomics (56)
Metabolomics (11)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (164)
Mus musculus (75)
Mycobacterium tuberculosis SP7 (16)
Mycobacterium tuberculosis SP10 (16)
Mycobacterium tuberculosis SP13 (16)
Mycobacterium tuberculosis SP22 (16)
Chlamydomonas reinhardtii (16)
Enterococcus mundtii CRL35 (16)
Oncorhynchus tshawytscha (16)
Rattus norvegicus (7)
Canis lupus familiaris (6)
Gallus gallus (6)
Arabidopsis thaliana (4)
Helicobacter pylori (2)
Danio rerio (2)
Saccharomyces cerevisiae (2)
Branchiostoma belcheri (1)
Macaca mulatta (1)
Sus scrofa (1)
Carthamus oxyacanthus (1)
Streptomyces (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Fragaria vesca (1)
Triticum aestivum subsp. tibeticum (1)
Cronobacter sakazakii (1)
Oryctolagus cuniculus (1)
Mus (1)
Rattus rattus (1)
Triticum aestivum (1)
Pseudomonas putida KT2440 (1)

Repository

biostudies-arrayexpress (227)
iProX (45)
pride (16)
MassIVE (12)
MetaboLights (9)
EGA (3)
GNPS (2)
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PanoramaPublic (1)

Tissue

Cell culture (4)
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HEK-293T cell (1)
Embryonic stem cell (1)
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Plant cell (1)
Blood plasma (1)
Whole body (1)
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Disease

Small cell lung carcinoma (1)
Osteoarthritis (1)
Rheumatoid arthritis (1)
Disease free (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (7)
Shotgun proteomics (7)
Bottom-up proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
Illumina HiSeq 2000 (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Data-dependent acquisition (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (9)
Orbitrap Fusion Lumos (6)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 4000 (5)
Q Exactive (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive Plus (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - negative - hilic (2)
Becton Dickinson INFLUX (1)
Applied Biosystems 1700 Chemiluminescent Microarray Analyzer (1)
BD Influx (1)
GenePix Professional 4200A [Axon Instruments] (1)
Axon- GenePix4000B (1)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Orbitrap Fusion ETD (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Elite (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2013 (47)
2012 (41)
2014 (27)
2015 (22)
2023 (21)
2011 (21)
2016 (16)
2010 (16)
2025 (14)
2021 (9)
2022 (8)
2019 (8)
2018 (7)
2008 (6)
2024 (5)
2020 (5)
2017 (4)
2009 (4)
2006 (4)
2026 (4)
2007 (1)
2005 (1)
2004 (1)

UNIPROT ID/AC

Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)

CHEBI ID

CHEBI:16119 (4)
CHEBI:30769 (4)
CHEBI:17895 (3)
CHEBI:15756 (3)
CHEBI:17351 (3)
CHEBI:15333 (2)
CHEBI:16796 (2)
CHEBI:27082 (2)
CHEBI:16532 (2)
CHEBI:16279 (2)
CHEBI:9347 (2)
CHEBI:30813 (2)
CHEBI:27781 (2)
CHEBI:28125 (2)
CHEBI:42504 (2)
CHEBI:17521 (2)
CHEBI:15584 (2)
CHEBI:30805 (2)
CHEBI:16217 (2)
CHEBI:26984 (2)
CHEBI:132223 (2)
CHEBI:33508 (2)
CHEBI:48430 (2)
CHEBI:18101 (2)
CHEBI:17660 (2)
CHEBI:43029 (2)
CHEBI:27693 (2)
CHEBI:16755 (2)
CHEBI:17202 (2)
CHEBI:16344 (2)

Metabolite Name

N-Acetyl-D-glucosamine (3)
Glycodeoxycholic acid (3)
Poncirin (3)
Xanthosine (3)
Biocytin (3)
Glycocholic acid (3)
Melatonin (3)
Sarcosine (3)
Phenylalanine (3)
Glutathione, oxidized (3)
Glutamine (3)
Azelaic acid (3)
Cytidine (3)
Xanthine (3)
D,l-n,n-didesmethyl-o-desmethylvenlafaxine (2)
1,2-dilauroyl-sn-glycero-3-phospho-sn-glycerol (2)
2-(2-hydroxybut-3-en-2-yl)-3a,6,6,9a-tetramethyl-2,4,5,5a,7,8,9,9b-octahydro-1h-benzo[e][1]benzofuran-4,5-diol (2)
Vincristine sulfate (2)
Microcystin lr (2)
7-keto-3.alpha.,12-.alpha.-dihydroxycholanic acid (2)
1-stearoyl-2-hydroxy-sn-glycero-3-phosphate (2)
Aspidocarpine (2)
Tyr-Met (2)
Hydrocortisone 21-hemisuccinate (2)
Ferrichrome (2)
Fenazaquin (2)
Cyhalothrin (2)
Cyhalofop-butyl (2)
Cyclopiazonic acid (2)
N-acetylcytidine (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

71.037114 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (110)
ChIP-seq (50)
RNA-seq of coding RNA (33)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (4)
Other (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
Genotyping by array (2)
ScATAC-seq (2)
Methylation profiling by array (2)
Transcription profiling by high throughput sequencing (1)
Baseline (1)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
High-throughput sequencing (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (206)
2024 (156)
2022 (155)
2023 (140)
2021 (131)
2020 (121)
2018 (100)
2019 (91)
2017 (60)
2013 (56)
2015 (55)
2016 (54)
2014 (50)
2012 (48)
2011 (28)
2026 (25)
2010 (16)
2008 (9)
2009 (4)
2006 (4)
2005 (3)
2007 (2)
2004 (2)
2002 (1)

Lab affiliation

Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (1)
Department of Ophthalmology, the Second Affiliated Hospital of Army Medical University (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Beijing, You An Men Wai Xi Tou Tiao No.10 Capital Medical University, Beijing Laboratory of Oral Health (1)
IDG/McGovern Institute for Brain Research, Tsinghua-Peking Joint Centre for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China (1)
Clinical Medical Research Center, Southwest Hospital, Third Military Medical University (Army Medical University) (1)
College of Biomedical Engineering & Instrument Science, Zhejiang University, Zheda Road 38, Hangzhou 310027, China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health (Suzhou Center), The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou 215002, China. (1)
Department of Immunology and Microbiology, Shanghai Jiao Tong University School of Medicine (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Experimental Radiation Oncology, MD Anderson Cancer Center, Houston, TX, USA (1)
The Fifth Affiliated Hospital of Guangzhou Medical University (1)
Northwest University (1)
Department of Plant Systems Biology, University of Hohenheim, 70593 Stuttgart, Germany (1)

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Associations of coagulation factor X and XI with incident acute coronary syndrome and stroke: A nested case-control study.

Not available

S-EPMC9290014 | biostudies-literature

High-resolution RNA allelotyping along the inactive X chromosome: evidence of RNA polymerase III in regulating chromatin configuration.

Not available

S-EPMC5377358 | biostudies-literature

GNPS liver data files for liver data files for "Improved Annotation of Untargeted Metabolomics Data through Buffer Modifications That Shift Adduct Mass and Intensity"

This is the dataset associated with the following publication: Improved Annotation of Untargeted Metabolomics Data through Buffer Modifications That Shift Adduct Mass and Intensity. Wenyun Lu, Xi Xing, Lin Wang, Li Chen, Sisi Zhang, Melanie R McReynolds, Joshua D Rabinowitz. Anal Chem. 2020 Sep 1;9...

ORGANISM(S): Mus <mouse, Genus> (ncbitaxon:10088)

2021-03-30 | MSV000087131 | GNPS

Structural organization of the inactive X chromosome in the mouse.

Not available

S-EPMC5443622 | biostudies-literature

Mass spec analysis of the sequences of proteins snFPITE-n1 and snFPITE-n2 from Sipunculus nudus

In this project, we purified proteins snFPITE-n1 and snFPITE-n2 from Sipunculus nudus, digested the proteins and determined the sequences of the proteins by Mass spec analysis. We have a database of the sequences of snFPITE proteins from Sipunculus nudus and we used the Mass spec results to search f...

ORGANISM(S): Sipunculus nudus

2025-04-03 | PXD043675 | Pride

Sipunculus nudus Mass spec

Robotic laparoendoscopic single-site surgery by da Vinci Xi system in gynecology: a retrospective series of 721 cases.

Not available

S-EPMC12750574 | biostudies-literature

Characterization of Xi-class mycothiol S-transferase from Corynebacterium glutamicum and its protective effects in oxidative stress.

Not available

S-EPMC6815410 | biostudies-literature

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses.

Not available

S-EPMC5114649 | biostudies-literature

Safety and feasibility of novel single-port robotic systems in colorectal cancer surgery: a comparative study with the da Vinci Xi system.

Not available

S-EPMC12627135 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

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