Chen Xiaoyu X - OmicsDI

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Proteomics (15)
Genomics (3)
Transcriptomics (3)
Metabolomics (3)
Unknown (1)
Multiomics (1)

Organisms

Homo sapiens (11)
Mus musculus (2)
Aeromonas bestiarum (2)
Scophthalmus maximus (2)
Tupaia belangeri (2)
Enterococcus faecalis str. Symbioflor 1 (2)
Bathymodiolus thermophilus (2)
Aeromonas rivuli (2)
Clonorchis sinensis (2)
Bacillus cytotoxicus (2)
Pseudomonas aeruginosa ATCC 15442 (2)
Amphistegina (2)
Colwellia psychrerythraea (2)
Legionella pneumophila (2)
Synechocystis sp. PCC 6803 substr. GT-I (2)
Caldalkalibacillus thermarum TA2.A1 (2)
Rhipicephalus pulchellus (2)
Tettigonia cantans (2)
Symbiodinium sp. ex Acropora millepora (2)
Bacillariophyta (2)
Staphylococcus pasteuri (2)
Byblis filifolia (2)
enrichment culture (2)
Acomys cahirinus (2)
Bombyx mori (1)
Ciona intestinalis (1)
Gallus gallus (1)
Arabidopsis thaliana (1)
Bacillus licheniformis (1)
Oryctolagus cuniculus (1)

Repository

iProX (10)
biostudies-arrayexpress (6)
MetaboLights (3)
MassIVE (2)
pride (2)
PanoramaPublic (1)

Tissue

Cell culture (2)
Early embryonic cell (1)
Epithelial cell (1)

Disease

Breast cancer (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (2)
Gel-based experiment (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Axon- GenePix4000B (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2023 (6)
2010 (5)
2025 (3)
2022 (2)
2020 (2)
2006 (1)
2026 (1)
2024 (1)
2021 (1)
2015 (1)
2018 (1)

CHEBI ID

CHEBI:62207 (2)
CHEBI:17786 (2)
CHEBI:16259 (2)
CHEBI:17712 (2)
CHEBI:70976 (2)
CHEBI:18107 (2)
CHEBI:16750 (2)
CHEBI:16704 (2)
CHEBI:17568 (2)
CHEBI:16742 (2)
CHEBI:16709 (2)
CHEBI:28044 (2)
CHEBI:16708 (2)
CHEBI:16695 (2)
CHEBI:17015 (2)
CHEBI:17533 (2)
CHEBI:7916 (2)
CHEBI:17596 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:16856 (2)
CHEBI:17858 (2)
CHEBI:16027 (2)
CHEBI:30915 (2)
CHEBI:197255 (1)
CHEBI:189015 (1)
CHEBI:197253 (1)
CHEBI:183553 (1)
CHEBI:185728 (1)
CHEBI:197251 (1)

Metabolite Name

Orotic acid (2)
3-Methylxanthine (2)
Xanthosine (2)
N-Acetylleucine (2)
Adenine (2)
N-Acetyl-L-phenylalanine (2)
Adenosine monophosphate (2)
Malic acid (2)
Succinic acid (2)
Inosine (2)
Uridine (2)
5,7-Dihydroxy-4'-methoxy-8-C-prenylflavanone (1)
Millinol B (1)
Luteolin 4'-methyl ether 7-(6''-malonylglucoside) (1)
Gibberellin A58 (1)
Isorhamnetin 3-(4'''-p-coumarylrobinobioside) (1)
6-Hydroxyenterodiol (1)
5,7-Dihydroxy-3-methoxy-4'-prenyloxyflavone (1)
5-methoxy-2,2-dimethyl-3,4-dihydro-2H-1-benzopyran-6-carboxylic acid (1)
Leptosin (1)
Ikarisoside C (1)
Longicaudatin (1)
Linderachalcone (1)
Gibberellin A97 (1)
Hispidulin 7-(6''-E-p-Coumaroylglucoside) (1)
Tricin 7-[feruloyl-(->2)-glucuronyl-(1->2)-glucuronide] (1)
6-endo-Hydroxyfenchone (1)
4,2',4'-Trihydroxy-3-methoxydihydrochalcone (1)
Kaempferol 3-rhamnoside 7-galacturonide (1)
8-Hydroxygalangin 3-methyl ether 8-methylbutyrate (1)

Study type

Methylation profiling by high throughput sequencing (2)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
ChIP-seq (1)
RNA-seq of coding RNA (1)

Release Date

2010 (5)
2006 (1)
2021 (1)

Lab affiliation

State Key Laboratory of Membrane Biology, Institute of Zoology, Chinese Academy of Sciences (1)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (lab head) (1)

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Xiaoyu Xiezhuo Drink Protects against Ischemia-Reperfusion Acute Kidney Injury in Aged Mice through Inhibiting the TGF-β1/Smad3 and HIF1 Signaling Pathways.

Not available

S-EPMC8449228 | biostudies-literature

Transcriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...

2023-09-21 | MTBLS6032 | MetaboLights

Single-cell metabolic fingerprints discover a cluster of circulating tumor cells with distinct metastatic potential

Circulating tumor cells (CTCs) are recognized as direct seeds of metastasis. However, CTC count may not be the 'best' indicator of metastatic risk because their heterogeneity is generally neglected. In this study, we develop a molecular typing system to predict colorectal cancer metastasis potent...

2023-08-21 | MTBLS5028 | MetaboLights

Chromatin immunoprecipitation of human cell lines with oestrogen receptor (ER), the E2F transcription factor 4 (E2F4),

The Goal of the experiment was to validate the predicted regulatory modules identified by an algorithm.For this we took advantage of the the genome-wide location analysis technique (or ?ChIP/chip?). We selected modules predicted to be bound by the estrogen receptor (ER), the E2F transcription factor...

ORGANISM(S): Homo sapiens

2006-05-01 | E-MEXP-471 | biostudies-arrayexpress

Targeting the SREBP-dependent lipidomic reprogramming by virus infection for broad-spectrum therapeutic intervention

Viruses are obligate intracellular parasites that exploit the host metabolic machineries to meet their extraordinary biosynthetic demands. Integrative transcriptomic and lipidomic profiling confirmed that Middle East respiratory syndrome coronavirus (MERS-CoV) infection reprograms the host lipid met...

2018-11-26 | MTBLS762 | MetaboLights

Examination of whole genome DNA methylation status of two chicken breeds

We report the genome-wide DNA methylation mapping of chicken by methylated DNA immunoprecipitation following by highthroughput sequencing, and the gene expression profile of chicken by RNA-seq. For meDIP-seq, about 17,202,074 to 27,501,760 reads were generated for the tissue and liver tissues of the...

ORGANISM(S): Gallus gallus

2010-04-02 | E-GEOD-21167 | biostudies-arrayexpress

Conservation and divergence of methylation patterning in plants and animals

Cytosine DNA methylation is a heritable epigenetic mark present in many eukaryotic organisms. While DNA methylation likely has a conserved role in gene silencing, the levels and patterns of DNA methylation appear to vary drastically among different organisms. Here, we used shotgun genomic bisulfite ...

ORGANISM(S): Ciona intestinalis

2010-04-09 | E-GEOD-21152 | biostudies-arrayexpress

LC-MS/MS identification of BMAL1 interaction proteins

Advances in circadian research revealed an intricate relationship between aging and circadian rhythms. However, whether and how the circadian machinery contribute to stem cell aging, especially in primates, remains poorly understood. In this study, we investigated the role of BMAL1, the only non-red...

ORGANISM(S): Homo sapiens (Human)

2022-03-18 | PXD030570 | Pride

Bmal1 aging

LC-MS/MS to identify WT, 8NQ, N91/104/309/322Q and N91/104/309/322 B7H3 interaction

The specific N-glycans of glycoproteins play key roles in regulating protein localization, stability and activity. B7H3, an immune checkpoint molecule, is a highly N-glycosylated membrane protein. However, the key glycosylated asparagine (Asn) residues that mediate the function of the B7H3 protein a...