Chen Xue X - OmicsDI

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Unknown (3355)
Proteomics (133)
Transcriptomics (24)
Metabolomics (19)
Genomics (16)

Organisms

Homo sapiens (76)
Aerococcus urinae NBRC 15544 = CCUG 36881 (51)
Andropogon gerardi (51)
Bacteria (51)
Bartonella quintana JK 31 (51)
Canis lupus familiaris (51)
Mus musculus (15)
Rattus norvegicus (4)
Escherichia coli (3)
Arabidopsis thaliana (2)
Rattus rattus (2)
Scutellaria baicalensis (2)
Oryza sativa (1)
Populus tremula x Populus alba (1)
Triticum aestivum (1)
Saccharomyces cerevisiae (1)
Aspergillus fumigatus (1)
Bos taurus (1)
Cronobacter sakazakii (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Danio rerio (1)
Drosophila melanogaster (1)
Escherichia coli RS218 (1)
Isatis tinctoria (1)
Macaca fascicularis fascicularis (1)
Magallana gigas (1)
Nicotiana tabacum (1)
Proteus mirabilis ATCC 29906 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Shewanella oneidensis MR-1 (1)

Repository

iProX (78)
pride (51)
biostudies-arrayexpress (24)
MetaboLights (17)
EGA (16)
MassIVE (4)
GNPS (2)

Tissue

Cell culture (17)
Liver (4)
Lung (4)
Brain (3)
Leaf (3)
Plant cell (3)
Testis (3)
Blood cell (2)
Epithelial cell (2)
Kidney (2)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Cholangiocarcinoma cell line (1)
Colon (1)
Early embryonic cell (1)
Fruit (1)
Heart (1)
Intervertebral disc (1)
Malignant cell (1)
Mesothelium (1)
Ovary (1)
Pericyte cell (1)
Peritoneal cavity (1)
Permanent cell line cell (1)
Root (1)
Seedling (1)
Sertoli cell (1)
Sperm (1)
Stem cell (1)

Disease

Acute leukemia (2)
Breast cancer (2)
Malignant neoplasm of ovary (2)
Cholangiocarcinoma (1)
Disease free (1)
Neuroblastoma (1)
Non-small cell lung carcinoma (1)
Oligospermia (1)
Peritoneal mesothelioma (1)
Polycystic ovary syndrome (1)
Thyroid cancer (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (25)
Mass spectrometry (16)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Top-down proteomics (3)
Data-independent acquisition (2)
Gel-based experiment (2)
ZCall, HumanExome_12v1.1_A -GenCall (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (8)
Q Exactive HF (2)
TripleTOF 6600 (2)
Xevo G2 QTOF (Waters) (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Elite (1)
Q Exactive (1)
Quattro micro API (Waters) (1)
Wates I-Class/XEVO-G2 XS QTOF (1)
Direct infusion MS - negative (1)
Agilent 5975E GC/MSD (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Direct infusion MS - positive (1)
API 4000 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2023 (28)
2022 (22)
2020 (19)
2025 (19)
2021 (16)
2026 (15)
2024 (14)
2019 (8)
2018 (7)
2014 (6)
2017 (5)
2015 (4)
2013 (4)
2012 (4)
2011 (3)
2010 (2)

CHEBI ID

CHEBI:55328 (7)
CHEBI:28875 (6)
CHEBI:17368 (6)
CHEBI:9347 (5)
CHEBI:28997 (5)
CHEBI:17521 (5)
CHEBI:17169 (5)
CHEBI:46961 (5)
CHEBI:16040 (5)
CHEBI:17748 (5)
CHEBI:16566 (5)
CHEBI:17620 (5)
CHEBI:16335 (5)
CHEBI:7916 (5)
CHEBI:16704 (5)
CHEBI:15354 (5)
CHEBI:17295 (5)
CHEBI:16828 (5)
CHEBI:78759 (4)
CHEBI:3437 (4)
CHEBI:48429 (4)
CHEBI:134190 (4)
CHEBI:10782 (4)
CHEBI:67252 (4)
CHEBI:73004 (4)
CHEBI:18292 (4)
CHEBI:28412 (4)
CHEBI:143235 (4)
CHEBI:16390 (4)
CHEBI:30805 (4)

Metabolite Name

Arachidonic acid (4)
Thymidine (4)
Uridine (4)
Hypoxanthine (4)
3-Acetyl-5alpha-androstane-3beta,17beta-diol 3-acetate (3)
Calcium pantothenate (3)
Penitrem B (3)
12-Oxo-2,3-dinor-10,15-phytodienoic acid (3)
N-Acetyl-a-neuraminic acid (3)
Phenylacetaldehyde (3)
Benzoyl glucuronide (Benzoic acid) (3)
5-Heptyltetrahydro-2-oxo-3-furancarboxylic acid (3)
11'-Carboxy-alpha-chromanol (3)
Tetrahydrocortisol (3)
Epothilone B (3)
Dehydroepiandrosterone sulfate (3)
Citrulline (3)
Benzaldehyde (3)
16-Hydroxy hexadecanoic acid (3)
9,10-DHOME (3)
9(S)-HOTrE (3)
Ricinoleic acid (3)
Taurine (3)
Xanthosine (3)
Citric acid (3)
Sativic acid (3)
Adenosine (3)
Swertiamarin (3)
Riboflavin (3)
L-Tryptophan (3)

Study type

RNA-seq of coding RNA (14)
Transcription profiling by array (6)
Unknown experiment type (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (664)
2023 (491)
2022 (470)
2024 (423)
2021 (333)
2020 (250)
2019 (161)
2018 (125)
2017 (102)
2016 (84)
2026 (64)
2015 (60)
2014 (59)
2013 (25)
2012 (17)
2011 (13)
2010 (9)
2009 (8)
2006 (6)
2007 (5)
2008 (4)
2002 (3)
2005 (2)
2003 (1)

Lab affiliation

Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang Province, China (2)
Sichuan University (2)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
Cancer Stem Cell and Translation Medicine Lab, Innovative Cancer Drug Research and Development Engineering Center of Liaoning Province, Department of Oncology, Shengjing Hospital of China Medical University, Shenyang, 110004, China (1)
Center of Reproductive Medicine, Nanjing Jinling Hospital, Clinical School of Medical College, Nanjing University, China. (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
Department of Biochemistry and Molecular Cell Biology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Plastic Surgery, Affiliated Friendship Plastic Surgery Hospital of Nanjing Medical University, Nanjing Medical University, Nanjing, China (1)
Department of Reproductive Medicine, Affiliated Jinling Hospital , Nanjing Medical University (1)
Departments of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China 510120. (1)
Guangdong Provincial Key Laboratory of Regional Immunity and Diseases, Shenzhen Key Laboratory of Translational Medicine of Tumor, International Cancer Center, Department of Cell Biology and Genetics, School of Medicine, Shenzhen University, Shenzhen, 518055, China. (1)
Huazhong Agricultural University (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/ Key Laboratory of Plant Functional Genomics of the Ministry of Education/ Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding, Agricultural College of Yangzhou University, Yangzhou 225009, China (1)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009,China (1)
Key Laboratory Medical molecular Virology, MoE/MoH Shanghai Medical College, Fudan University 138 Yi Xue Yuan Road, Shanghai, China, 200032 (1)
Key Laboratory of Molecular Biophysics of Ministry of Education, College of Life Science and Technology and the Collaborative Innovation Center for Brain Science, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China (1)
Key Laboratory of Soybean Biology of Chinese Education Ministry, Harbin 150030, China (1)
Key Laboratory of the Ministry of Education for Medicinal Resources and Natural Pharmaceutical Chemistry, National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest of China, College of Life Sciences,Shaanxi Normal University,Xi'an,Shaanxi,China (1)
NO.2 Yabao Road, Beijing Province (1)
Nephrology Department of Guilin No.924 Hospital, Guangxi Key Laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research; Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) (1)

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Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysis.

Not available

S-EPMC6211550 | biostudies-literature

Transcriptome Profiling of A549 Xenografts of Nonsmall-cell Lung Cancer Treated with Qing-Re-Huo-Xue Formula.

Not available

S-EPMC9507736 | biostudies-literature

Therapeutic effect of Xue Niao An on glyoxylate-induced calcium oxalate crystal deposition based on urinary metabonomics approach.

Not available

S-EPMC4227831 | biostudies-literature

Global involvement of lysine crotonylation in protein modification and transcription regulation in rice

Lysine crotonylation (Kcr) is a newly discovered post-translational modification (PTM) existing in mammals. A global crotonylome analysis was undertaken in rice (Oryza sativa L. japonica) using high accuracy nano-LC-MS/MS in combination with crotonylated peptide enrichment. A total of 1,265 lysine c...

ORGANISM(S): Oryza sativa (Rice)

2018-09-20 | PXD010376 | Pride

miR-30a-3p inhibits renal cancer cell invasion and metastasis through targeting ATG12.

Not available

S-EPMC7214999 | biostudies-literature

Multimethodological and multiscale investigation of the therapeutic mechanism of Qian Ji Sheng Xue Pian in treating primary immune thrombocytopenia.

Not available

S-EPMC12797464 | biostudies-literature

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

RNA-seq analysis of differentiating human erythroblasts

Human erythroblasts purified from cord blood were cultured in vitro and FACS-sorted into five highly purified populations representing distinct differentiation stages: proerythroblasts, early basophilic erythroblasts, late basophilic erythroblasts, polychromatophilic erythroblasts, and orthochromat...

ORGANISM(S): Homo sapiens

2013-12-25 | E-GEOD-53635 | biostudies-arrayexpress

HARD-AP-drived RBPome in HEK293 cells, mouse brain and kidney without UV-crosslinking

Identification of RBPs proteome in HEK293 cells and adult mouse brain and kidney which were not treated with UV light before isolation with HARD beads.

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2024-08-26 | PXD053382 | Pride

Rbpome Hard-ap

RBPs proteome in HEK293 cells, mESCs and mouse organs

Identification of RBPs proteome in HEK293 cells, mouse embryonic stem cells (mESCs) and adult mouse primary organs (brain, heart, lung, kidney, liver)

ORGANISM(S): Mus musculus (Mouse) Homo sapiens (Human)

2024-08-26 | PXD037105 | Pride

Rna-binding proteins

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3547 Results

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