Chen Y-J YJ - OmicsDI

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Unknown (846)
Genomics (19)
Proteomics (16)
Transcriptomics (5)
Metabolomics (4)

Organisms

Homo sapiens (30)
Mus musculus (5)
Rattus norvegicus (1)
Capsella rubella (1)
Chlorocebus sabaeus (1)
Rhodopseudomonas palustris (1)

Repository

EGA (19)
pride (8)
iProX (7)
biostudies-arrayexpress (5)
MetaboLights (4)
MassIVE (1)

Tissue

Cell culture (4)
Brain (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Epithelial cell (1)
Inner medullary collecting duct (1)
Liver (1)

Disease

Disease free (2)
Colon cancer (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (4)
Shotgun proteomics (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Illumina HiSeq 2000, unknown (1)
Illumina HiSeq 2500 (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (2)
TimsTOF HT (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ (1)

Publication Date

2025 (7)
2023 (4)
2016 (2)
2015 (2)
2012 (2)
2024 (2)
2021 (2)
2014 (1)
2026 (1)
2022 (1)
2010 (1)

CHEBI ID

CHEBI:15354 (3)
CHEBI:16811 (3)
CHEBI:16919 (3)
CHEBI:17822 (3)
CHEBI:18257 (3)
CHEBI:25017 (3)
CHEBI:25094 (3)
CHEBI:26271 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:28300 (3)
CHEBI:29016 (3)
CHEBI:15414 (2)
CHEBI:15728 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16020 (2)
CHEBI:16027 (2)
CHEBI:16264 (2)
CHEBI:16335 (2)
CHEBI:16436 (2)
CHEBI:165589 (2)
CHEBI:16610 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16857 (2)
CHEBI:16870 (2)
CHEBI:17126 (2)

Metabolite Name

2,4,7-tridecatrienal (2)
Aminoadipic acid (2)
Choline (2)
Creatine (2)
Methionine (2)
Proline (2)
Putrescine (2)
Spermidine (2)
Valine (2)
(+)-8'-hydroxyabscisic acid (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-d-glucoside (1)
(-)-lupinine (1)
(11z,14z)-eicosadienoylcarnitine (1)
(1s,2r)-1,2-dihydrodibenzo[b,d]thiophene-1,2-diol (1)
(1s,2r,3s,5s,6s,16e,18e,20r,21s)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,16-trimethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate (1)
(2,7-dimethyloctahydro-1h-cyclopenta[c]pyridin-4-yl)methanol (1)
(2e)-2-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-ylidene]-1,6-dioxaspiro[4.4]non-3-ene (1)
(2r,3s)-2-methylcitric acid (1)
(2s,3r,4e,8e)-3-hydroxy-2-[methyl(stearoyl)amino]-4,8-octadecadien-1-yl hydrogen sulfate (1)
(2s,3s,4s,5r,6s)-6-(hydroxymethyl)-5-{[(2r,3s,4s,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)-5-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2-yl]oxy}tetrahydro-2h-pyran-2,3,4,5-tetrol (1)
(2s,4ar,4br,6as,12bs,12cs,14as)-2-(2-hydroxy-2-propanyl)-12b,12c-dimethyl-3,4,5,6,6a,7,12,12b,12c,13,14,14a-dodecahydro-2h-chromeno[5',6':6,7]indeno[1,2-b]indole-4a(4bh)-carbaldehyde (1)
(2s,4s)-4-amino-2-hydroxy-2-methylpentanedioic acid (1)
(2s,4s)-pinnatanine (1)
(2z)-3-{5-[(4z)-5-(methylsulfanyl)-4-penten-2-yn-1-yl]-2-furyl}acrylaldehyde (1)
(2z,4z)-2-hydroxyhexa-2,4-dienoic acid (1)
(3-methyl-2-butenyl)-benzene (1)
(3s,5r,6s,7e,9x)-7-megastigmene-3,6,9-triol 9-glucoside (1)
(4-methylphenyl)acetaldehyde (1)
(4e,6e,d14:2) sphingosine (1)
(7s)-7-{[(2s)-9-hydroxy-2-isobutyl-3-oxo-2,3,9,9a-tetrahydro-1h-imidazo[1,2-a]indol-9-yl]methyl}-6,7-dihydroquinazolino[3,2-a][1,4]benzodiazepine-5,13-dione (1)

Modification

15.994915 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (2)

Release Date

2023 (95)
2025 (94)
2022 (88)
2024 (86)
2021 (85)
2020 (76)
2019 (55)
2018 (53)
2017 (44)
2016 (39)
2015 (36)
2014 (25)
2013 (20)
2012 (16)
2026 (13)
2011 (10)
2010 (4)
2008 (4)
2009 (2)
2005 (2)
2007 (1)
2006 (1)
2000 (1)
1998 (1)

Lab affiliation

Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Department of chemistry, Fudan univerisity, Shanghai, China (1)
Fudan University Shanghai Cancer Center, Shanghai Key Laboratory of Medical Epigenetics, Shanghai Key Laboratory of Radiation Oncology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China. (1)
Institute of molecular and cellular biology (1)
Joint Proteomics Facility (1)
State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310003, China (1)
The First Affiliated Hospital, School of Medicine, Zhejiang University (1)
University of North Carolina, Department of Biochemistry and Biophysics (1)

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Morphology, molecular genetics, and acoustics reveal two new species of the genus Leptobrachella from northwestern Guizhou Province, China (Anura, Megophryidae).

Not available

S-EPMC6536485 | biostudies-literature

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Targeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7832 | MetaboLights

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Untargeted metabolomics)

2024-02-12 | MTBLS7840 | MetaboLights

Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Snt309p, a component of the Prp19p-associated complex that interacts with Prp19p and associates with the spliceosome simultaneously with or immediately after dissociation of U4 in the same manner as Prp19p.

Not available

S-EPMC121462 | biostudies-literature

Identification, Culture Characteristics and Whole-Genome Analysis of Pestalotiopsis neglecta Causing Black Spot Blight of Pinus sylvestris var. mongolica.

Not available

S-EPMC10219049 | biostudies-literature

In Vitro Design and Evaluation of Phage Cocktails Against Aeromonas salmonicida.

Not available

S-EPMC6043867 | biostudies-literature

Epicuticular wax of sweet sorghum influenced the microbial community and fermentation quality of silage.

Not available