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ProteomicspLink 2: A high-speed search engine with systematic evaluation for proteome-scale identification of cross-linked peptides
Crosslinking mass spectrometry (CXMS) is a powerful technique to study protein structures and interactions. However, software tools for CXMS data analysis suffer from poor speed and credibility, especially at a proteome scale. Here, we introduce pLink 2, a search engine with higher speed and credibi...
ORGANISM(S): Escherichia coli 
2019-07-26 | PXD012109 | Pride
E.coli Qehf 
ProteomicsSpatial-temporal protein interactome profiling via condensation enhanced crosslinking
MS data for the verification of metabolic incorporation of δ-photolysine, calculation for the crosslinking distance by DegP crosslinking, and the proteomics analysis for the dynamic direct interactome of NPM1 as well as the SG-specific interactomes of SARS-CoV-2 Nucleocapsid protein and YTHDF1/2.
ORGANISM(S): Homo Sapiens Escherichia Coli Severe Acute Respiratory Syndrome Coronavirus 2 
PXD052099 |
ProteomicsA proteomics data analysis protocol using Open-pFind
High-throughput proteomics based on mass spectrometry (MS) analysis has permeated biomedical science and propelled numerous research projects. pFind 3 is a database search engine for high-speed and in-depth proteomics data analysis (Chi et al. 2018). pFind 3 features a swift open search workflow tha...
ORGANISM(S): Homo Sapiens Caenorhabditis Elegans 
2021-01-31 | PXD023901 |
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