Cheng Shan S - OmicsDI

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Unknown (269)
Transcriptomics (8)
Proteomics (7)
Metabolomics (2)
Genomics (1)

Organisms

Arabidopsis thaliana (9)
Homo sapiens (4)
Mus musculus (2)
Schistosoma mansoni (1)
Capsicum annuum (1)
Glycine max (1)
Oryza sativa (1)
Solanum lycopersicum (1)
Zea mays (1)

Repository

biostudies-arrayexpress (8)
pride (4)
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Disease

Coronavirus infectious disease (1)

Technology Type

Mass Spectrometry (4)
Mass spectrometry (2)
Shotgun proteomics (2)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina HiSeq 2000 (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (4)
2025 (3)
2021 (3)
2015 (2)
2014 (1)
2012 (1)
2024 (1)
2026 (1)
2019 (1)

CHEBI ID

CHEBI:131427 (1)
CHEBI:131428 (1)
CHEBI:131430 (1)
CHEBI:131439 (1)
CHEBI:131440 (1)
CHEBI:131993 (1)
CHEBI:132502 (1)
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CHEBI:137610 (1)
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CHEBI:140944 (1)
CHEBI:140947 (1)
CHEBI:140948 (1)

Metabolite Name

ADP (1)
ATP (1)
CDP (1)
CTP (1)
Citrate (1)
GDP (1)
GTP (1)
IMP (1)
LPC(16:0) (1)
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LPC(18:2) (1)
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LPE(18:1) (1)
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NAD (1)
NADP (1)
PC(16:0_16:0) (1)
PC(16:0_16:1) (1)
PC(16:0_18:1) (1)
PC(16:0_20:4) (1)
PC(16:0_22:4) (1)
PC(16:1_18:1) (1)
PC(17:0_18:1) (1)
PC(17:0_18:2) (1)
PC(18:0_18:1) (1)

Study type

Transcription profiling by array (6)
RNA-seq of coding RNA (2)

Release Date

2025 (48)
2024 (34)
2021 (34)
2023 (29)
2022 (29)
2020 (25)
2018 (14)
2019 (11)
2015 (9)
2017 (9)
2016 (9)
2026 (6)
2010 (5)
2013 (5)
2014 (4)
2012 (4)
2011 (1)
2009 (1)

Lab affiliation

1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)
BBE, Caltech (1)
Department of Biology, University of Florida (1)
Lushan Botanical Garden, Jiangxi Province and Chinese Academy of Sciences (1)

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Proteomics revealed novel functions and drought tolerance of Arabidopsis thaliana protein kinase ATG1

These results illuminate previously unknown functions for ATG1 and offers novel perspectives into the underlying processes of autophagy function.

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2025-01-20 | PXD057141 | Pride

Atg1 Proteomics

Surgery alone, adjuvant tegafur/gimeracil/octeracil (S-1), or platinum-based chemotherapies for resectable gastric cancer: real-world experience and a propensity score matching analysis.

Not available

S-EPMC8268293 | biostudies-literature

Mechanism of protective effect of xuan-bai-cheng-qi decoction on LPS-induced acute lung injury based on an integrated network pharmacology and RNA-sequencing approach.

Not available

S-EPMC8237774 | biostudies-literature

RNA-seq analysis of flg22-induced gene expression changes in wild type, asr3-1 mutant and OX9 overexpression line

The correlation coefficient (R) for the expression profile of all transcripts between WT and asr3-1, and between WT and OX9 without flg22 treatment is close to linear, suggesting that ASR3 does not affect general gene transcription. Hierarchical clustering analysis flg22-induced genes in any of the ...

ORGANISM(S): Arabidopsis thaliana

2015-08-26 | E-GEOD-63603 | biostudies-arrayexpress

Targeting the Ischemic Core: A Therapeutic Microdialytic Approach to Prevent Neuronal Death and Restore Functional Behaviors

Not available

S-EPMC12027531 | biostudies-literature

Impaired Chromatin Remodeling Predicts Better Survival to Modified Gemcitabine and S-1 plus Nivolumab in Advanced Biliary Tract Cancer: A Phase II T1219 Study.

Not available

S-EPMC9527499 | biostudies-literature

Multicentre, phase II study of gemcitabine and S-1 in patients with advanced biliary tract cancer: TG1308 study.

Not available

S-EPMC7540301 | biostudies-literature

The mechanisms of human hotdog-fold thioesterase 2 (hTHEM2) substrate recognition and catalysis illuminated by a structure and function based analysis.