Cheung M M - OmicsDI

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Unknown (2325)
Transcriptomics (113)
Genomics (92)
Proteomics (72)
Metabolomics (4)

Organisms

Homo sapiens (156)
Mus musculus (43)
Caenorhabditis elegans (30)
Gallus gallus (10)
Canis lupus familiaris (6)
Clostridium perfringens str. 13 (3)
Rattus norvegicus (2)
Clostridium perfringens (1)
Arachis hypogaea (1)
Staphylococcus aureus subsp. aureus COL (1)
Gossypium hirsutum (1)
Brassica rapa (1)
Medicago sativa (1)
Schizosaccharomyces pombe (1)
Staphylococcus aureus (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 (1)
Cavia (1)
Chlorocebus sabaeus (1)
Cochlearia danica (1)
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11 (1)
Equus caballus (1)
Escherichia coli (1)
Euzebya tangerina (1)
Ovis aries (1)
Sorbus aucuparia (1)
Spodoptera frugiperda (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (150)
pride (62)
EGA (54)
MassIVE (8)
MetaboLights (4)
iProX (2)
ENA (1)

Tissue

Cell culture (20)
Brain (14)
Epithelial cell (7)
B cell (3)
Blood plasma (3)
Blood (2)
Kidney (2)
Retina (2)
T cell (2)
Whole body (2)
Aerial part (1)
Amnion (1)
Amniotic fluid (1)
Blood cell (1)
Brain vascular cell (1)
Brown adipose tissue (1)
Cell suspension culture (1)
Epithelial cell of endometrial gland (1)
HeLa cell (1)
Heart (1)
Hepatocyte (1)
Intestine (1)
Leukocyte (1)
Liver (1)
Lung (1)
Lymph node (1)
Malignant cell (1)
Microglial cell (1)
Monocyte (1)
Muscle (1)

Disease

IRAK-4 Q293X mutation (1)
Acute leukemia (1)
Alzheimer's disease (1)
Bone cancer (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Colon cancer (1)
Endometrial cancer (1)
Hepatocellular carcinoma (1)
Lung cancer (1)
Lymphoma (1)
Myopia (1)
Neuroblastoma (1)
Non-small cell lung carcinoma (1)
Polycystic kidney disease (1)
Proliferative diabetic retinopathy (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (62)
Shotgun proteomics (29)
Bottom-up proteomics (18)
Data-dependent acquisition (11)
Data-independent acquisition (11)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (4)
SWATH MS (4)
Gel-based experiment (2)
Illumina 450K, Bisulfite-Seq (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2500 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Olink affinity proteomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

LTQ Orbitrap Elite (4)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - positive - reverse phase (2)
ViiA 7 Real-Time PCR System (Life Technologies) (1)
Illumina HiSeq 4000 (1)
8890 GC/MS (1)
TimsTOF Pro (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative - reverse phase (1)
TripleTOF 5600 (AB Sciex) (1)

Publication Date

2011 (46)
2013 (39)
2025 (18)
2010 (18)
2014 (10)
2008 (10)
2026 (10)
2022 (9)
2012 (8)
2024 (8)
2020 (7)
2023 (7)
2021 (6)
2015 (6)
2019 (5)
2016 (3)
2006 (3)
2018 (3)
2007 (2)
2009 (1)
2005 (1)

CHEBI ID

CHEBI:136141 (2)
CHEBI:64563 (2)
CHEBI:64567 (2)
CHEBI:64568 (2)
CHEBI:64569 (2)
CHEBI:72734 (2)
CHEBI:72735 (2)
CHEBI:91296 (2)
CHEBI:10136 (1)
CHEBI:102265 (1)
CHEBI:107667 (1)
CHEBI:107736 (1)
CHEBI:116278 (1)
CHEBI:116314 (1)
CHEBI:121071 (1)
CHEBI:124938 (1)
CHEBI:131342 (1)
CHEBI:131924 (1)
CHEBI:131988 (1)
CHEBI:131993 (1)
CHEBI:132034 (1)
CHEBI:132327 (1)
CHEBI:132673 (1)
CHEBI:132676 (1)
CHEBI:132677 (1)
CHEBI:133199 (1)
CHEBI:133229 (1)
CHEBI:133600 (1)
CHEBI:133640 (1)
CHEBI:133662 (1)

Metabolite Name

(-)-Epinephrine (1)
(R)-Butaprost, free acid (1)
1,2-Di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-myo-inositol) (1)
1,2-Dioctadecanoyl-sn-glycero-3-phospho-(1'-myo-inositol) (1)
1-(1Z-Hexadecenyl)-sn-glycero-3-phosphocholine (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphoethanolamine (1)
1-Arachidoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoserine (1)
1-Hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-myo-inositol) (1)
1-Myristoyl-2-hydroxy-sn-glycero-3-phosphate (1)
1-O-Hexadecyl-2-O-(2E-butenoyl)-sn-glyceryl-3-phosphocholine (1)
1-Oleoyl-L-alpha-lysophosphatidic acid (1)
1-Palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
13,14-Dehydro-15-cyclohexyl Carbaprostacyclin (1)
13,14-Dihydro-19(R)-hydroxy Prostaglandin E1 (1)
15-Ketoiloprost (1)
15-Ketoprostaglandin E2 (1)
15-OxoETE (1)
16-Phenoxy tetranor prostaglandin F2alpha (1)
17,20,21-Trihydroxypregn-1-ene-3,11-dione (1)
2'-Hydroxy-2,5,6'-trimethoxychalcone (1)
2'-Hydroxy-4-methoxychalcone (1)
2,6-Di-tert-butyl-4-methoxyphenol (1)
2-Hexyldecanoic acid (1)
2-Linoleoyl-1-palmitoyl-sn-glycero-3-phosphoethanolamine (1)
3,7-Dihydroxy-3',4'-dimethoxyflavone (1)
3-Dehydroepiandrosterone sulfate (1)

First Public Date

2017 (1)

Study type

Transcription profiling by array (73)
ChIP-seq (36)
RNA-seq of coding RNA (9)
ChIP-chip by array (6)
ChIP-chip by tiling array (5)
Comparative genomic hybridization by array (4)
Other (4)
Unknown experiment type (3)
RNA-seq of non coding RNA (3)
Transcription profiling by tiling array (2)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (277)
2023 (260)
2025 (245)
2021 (232)
2024 (224)
2020 (166)
2019 (151)
2018 (143)
2016 (110)
2017 (104)
2011 (84)
2015 (83)
2013 (80)
2014 (76)
2012 (48)
2026 (45)
2010 (43)
2008 (30)
2009 (25)
2006 (14)
2007 (10)
2005 (7)
2004 (7)
2003 (3)
2002 (3)
2000 (3)
2001 (2)

Lab affiliation

Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
1. Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong 2. Centre for Eye and Vision Research (CEVR), 17W Hong Kong Science Park, Hong Kong 3. Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University, Hong Kong (1)
Associate Professor, Laboratory of Experimental Optometry, Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong (1)
Associate Professor, SBMS, HKU (1)
CNC-Center for Neuroscience and Cell Biology, University of Coimbra, 3004-517 Coimbra, Portugal; Biocant, Biotechnology Innovation Center, 3060-197 Cantanhede, Portugal (1)
Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK (1)
Cancer Signaling and Epigenetics Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hung Hom, Hong Kong. (1)
Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong Special Administrative Region, China (1)
Deparatment of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig Telefon +49 341 235 4767 | Fax +49 341 235 450823 (1)
Department of Geosciences, Princeton University, Princeton, USA, 09544 (1)
Department of Life Science, National Taiwan University (1)
Department of Life Science, National Taiwan University, Taipei, Taiwan. (1)
Department of Molecular Biolgy, Princeton University, USA (1)
Department of Neurology and Neurological Sciences, Stanford University (1)
Department of Neurology and Neurological Sciences, Stanford University, United States (1)
Department of Neurology and Neurosciences, Stanford University, Stanford, CA, USA (1)
Department of Obstetrics & Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Paediatrics & Adolescent Medicine, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, China. (1)
Department of Pathology Beth Israel Deaconess Medical Center Harvard Medical School, Boston, MA, 02115, USA. (1)
Department of Pharmacology and Pharmacy, Li Ka Shing Faculty of Medicine, The University of Hong Kong (1)
Dept of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (1)
Discovery Proteomics, Genentech (1)
Faculty of Health Sciences, University of Macau, Macau, China (1)
Faculty of Health Sciences, University of Macau, Taipa, Macau, China (1)
Faculty of Life Sciences, University of Dundee (1)
Genentech, Inc. (1)
Guangdong Provincial Key Laboratory of Digestive Cancer Research, The Seventh Affiliated Hospital of Sun Yat-sen University, No. 628 Zhenyuan Road, Shenzhen, 518107, Guangdong, People’s Republic of China. (1)
Head of the Curie Institute Mass Spectrometry Platform (1)

Tags

xref:PubMed:25428506 (1)

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RNA-DNA DIFFERENCES IN NASCENT RNA

RNA sequences are expected to be identical to their corresponding DNA sequences. Advances in technologies have enabled deep sequencing of nucleic acids that uncovered exceptions to the one-to-one relationship between DNA and RNA sequences. Previously in human cells, post-transcriptional RNA editin...

ORGANISM(S): Homo sapiens

2014-02-21 | E-GEOD-39878 | biostudies-arrayexpress

A Human Model of Cerebral Amyloid Angiopathy Using Neural Crest-Derived Vascular Smooth Muscle Cells

There is a growing recognition of cerebrovascular contribution to neurodegenerative diseases. Cerebral amyloid angiopathy (CAA), characterised by amyloid-beta (AM-NM-2) deposits in the walls of intracerebral and leptomeningeal arteries, is evident in a majority of AlzheimerM-bM-^@M-^Ys disease patie...

ORGANISM(S): Homo sapiens

2015-01-21 | E-GEOD-55173 | biostudies-arrayexpress

Global transcriptomic profiling of lactacystin-mediated neuronal death

Inhibition of proteasome degradation pathway has been implicated in neuronal cell death leading to neurodegenerative diseases such as ParkinsonM-bM-^@M-^Ys disease and AlzheimerM-bM-^@M-^Ys disease. Pharmacological proteasomal inhibitors such as lactacystin can induce apoptosis in cultured mouse co...

ORGANISM(S): Mus musculus

2012-01-03 | E-GEOD-22465 | biostudies-arrayexpress

A Novel Small Molecule, 1,3-di-m-tolyl-urea, Inhibits and Disrupts Multispecies Oral Biofilms.

Not available

S-EPMC7570320 | biostudies-literature

Metabolomics Analysis Reveals Tissue-Specific Metabolite Compositions in Leaf Blade and Traps of Carnivorous Nepenthes Plants

Nepenthes is a genus of carnivorous plants that evolved a pitfall trap, the pitcher, to catch and digest insect prey to obtain additional nutrients. Each pitcher is part of the whole leaf, together with a leaf blade. These two completely different parts of the same organ were studied separately in a...

2020-07-10 | MTBLS1783 | MetaboLights

Modulation of ATM enhances DNA repair in G2/M phase of cell cycle and averts senescence in Fuchs endothelial corneal dystrophy.

Not available

S-EPMC11551145 | biostudies-literature

[(Cp2M)2B9H11] (M = Zr or Hf): early transition metal 'guarded' heptaborane with strong covalent and electrostatic bonding.

Not available

S-EPMC5892308 | biostudies-literature

Tumor suppressive role of mitochondrial sirtuin 4 in induction of G2/M cell cycle arrest and apoptosis in hepatitis B virus-related hepatocellular carcinoma.

Not available

S-EPMC8087836 | biostudies-literature

UNIversity students' LIFEstyle behaviours and Mental health cohort (UNILIFE-M): study protocol of a multicentre, prospective cohort study.

Not available