Choi J J - OmicsDI

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Unknown (12894)
Proteomics (283)
Transcriptomics (124)
Genomics (38)
Metabolomics (17)
Models (1)
Genomic (1)
Other (1)

Organisms

Homo sapiens (206)
Mus musculus (96)
Arabidopsis thaliana (12)
Daphnia pulex (9)
Saccharomyces cerevisiae (8)
Drosophila melanogaster (7)
Escherichia coli (7)
Danio rerio (7)
Aplysia californica (4)
Rattus norvegicus (4)
Paracidovorax citrulli (4)
Sus scrofa domesticus (4)
Schizosaccharomyces pombe (3)
Oryza sativa Japonica Group (2)
Ancylostoma ceylanicum (2)
Bacillus velezensis (2)
Bos taurus (2)
Mycobacterium tuberculosis H37Rv (2)
Staphylococcus aureus (2)
Agrobacterium tumefaciens (1)
Burkholderia glumae BGR1 (1)
Colletotrichum higginsianum (1)
Rosa hybrid cultivar (1)
Brugia malayi (1)
Pan troglodytes (1)
Caenorhabditis elegans (1)
Mesocricetus auratus (1)
blank sample (1)
288671 (1)
Akkermansia muciniphila ATCC BAA-835 (1)

Organisms

Lactiplantibacillus plantarum (1)
Mus musculus (1)

Repository

pride (247)
biostudies-arrayexpress (136)
MassIVE (26)
EGA (21)
MetaboLights (16)
ENA (4)
iProX (3)
PanoramaPublic (3)
PeptideAtlas (3)
BioModels (1)
dbGaP (1)
geo (1)
GNPS (1)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (49)
Epithelial cell (20)
Brain (14)
Blood plasma (13)
Embryo (12)
Permanent cell line cell (10)
Kidney (8)
Hepatocyte (6)
Blood serum (5)
Lung (5)
Plant cell (5)
Early embryonic cell (4)
HEK-293T cell (4)
Leaf (4)
B cell (3)
Blood (3)
Bone cell (3)
Cell suspension culture (3)
Colon (3)
Embryonic stem cell (3)
HeLa cell (3)
Heart (3)
Liver (3)
Primary cell (3)
T cell (3)
Others (2)
Blood cell (2)
Breast (2)
Colorectal cancer cell line (2)
Digestive System (1)

Disease

Disease free (7)
Breast cancer (6)
Malignant neoplasm of ovary (5)
Brain glioblastoma multiforme (4)
Osteosarcoma (4)
Type 2 diabetes mellitus (4)
Acute leukemia (3)
Brain cancer (3)
Cervix carcinoma (3)
Parkinson's disease (3)
Alzheimer's disease (2)
Colon cancer (2)
Human immunodeficiency virus infectious disease (2)
Influenza (2)
Pancreatic ductal adenocarcinoma (2)
Urinary bladder cancer (2)
Normal (1)
Not Available (1)
Bacterial sepsis (1)
Bone cancer (1)
Breast secretory carcinoma (1)
Cardiovascular system disease (1)
Chronic lymphocytic leukemia (1)
Chronic myeloid leukemia (1)
Colon carcinoma (1)
Cystic fibrosis (1)
Diabetes mellitus (1)
Diffuse large B-cell lymphoma (1)
Hepatocellular carcinoma (1)
Leukoencephalopathy with vanishing white matter (1)

Technology Type

Mass Spectrometry (247)
Shotgun proteomics (120)
Bottom-up proteomics (63)
Affinity purification coupled with mass spectrometry proteomics (43)
Data-dependent acquisition (21)
Gel-based experiment (14)
SWATH MS (12)
Data-independent acquisition (11)
Mass spectrometry (10)
SRM/MRM (7)
Top-down proteomics (5)
NMR spectroscopy (4)
Mass spectrometry assay (3)
Illumina HiSeq 2500, ILLUMINA (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Immunopeptidomics (1)
Proteogenomics (1)

Instrument Platform

Q Exactive (7)
LTQ Orbitrap Velos (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Q Exactive HF (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Orbitrap Fusion Lumos (2)
TripleTOF 5600 (2)
Bruker (2)
Liquid Chromatography MS - positive - hilic (2)
Growth chamber (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Xevo G2 Q-Tof (1)
Instrument (1)
4000 QTRAP (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Q Exactive HF-X (1)
QExactive HFX (1)
QTRAP 5500 (1)
TSQ Vantage (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)

Publication Date

2013 (35)
2024 (34)
2025 (34)
2022 (31)
2023 (31)
2021 (31)
2026 (29)
2015 (27)
2020 (23)
2014 (20)
2012 (20)
2016 (19)
2011 (18)
2018 (17)
2010 (16)
2019 (16)
2017 (11)
2008 (7)
2009 (6)
2007 (6)
2004 (2)
2005 (1)

UNIPROT ID/AC

3MG2_ECOLI (1)
3PASE_ECOLI (1)
5FCL_ECOLI (1)
6PGD_ECOLI (1)
A2MG_ECOLI (1)
AAT_ECOLI (1)
ABGB_ECOLI (1)
ACDH_ECOLI (1)
ACKA_ECOLI (1)
ACNB_ECOLI (1)
ACPS_ECOLI (1)
ACYP_ECOLI (1)
ADIA_ECOLI (1)
AG43_ECOLI (1)
AIDB_ECOLI (1)
AK2H_ECOLI (1)
ALAA_ECOLI (1)
ALDA_ECOLI (1)
ALDB_ECOLI (1)
ALF1_ECOLI (1)
ALF_ECOLI (1)
ALLC_ECOLI (1)
ALR1_ECOLI (1)
ALR2_ECOLI (1)
ALSA_ECOLI (1)
ALSK_ECOLI (1)
AMIB_ECOLI (1)
AMPN_ECOLI (1)
AMPP_ECOLI (1)
APAG_ECOLI (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (2)

CHEBI ID

CHEBI:15354 (6)
CHEBI:18012 (6)
CHEBI:26986 (6)
CHEBI:27266 (6)
CHEBI:28300 (6)
CHEBI:28790 (6)
CHEBI:15741 (5)
CHEBI:16449 (5)
CHEBI:16708 (5)
CHEBI:17015 (5)
CHEBI:17234 (5)
CHEBI:17345 (5)
CHEBI:17562 (5)
CHEBI:17750 (5)
CHEBI:17992 (5)
CHEBI:22653 (5)
CHEBI:24898 (5)
CHEBI:25094 (5)
CHEBI:78320 (5)
CHEBI:15318 (4)
CHEBI:15428 (4)
CHEBI:15698 (4)
CHEBI:15727 (4)
CHEBI:15940 (4)
CHEBI:15978 (4)
CHEBI:16027 (4)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:22984 (1)
CHEBI:26216 (1)

Metabolite Name

Lactate (4)
Alanine (3)
Asparagine (3)
Fructose (3)
Glucose (3)
Glycine (3)
Proline (3)
Threonine (3)
Uridine (3)
Valine (3)
(R)-3-hydroxybutyrylcarnitine (2)
1-methyladenosine (2)
1-methylnicotinamide (2)
2'-deoxycytidine (2)
2'-deoxyuridine (2)
2-aminoadipic acid (2)
4-pyridoxic acid (2)
Adenine (2)
Aminopterin (2)
Bis(3,5,5-trimethylhexyl) phthalate (2)
CDP-ethanolamine (2)
Choline (2)
Cytidine (2)
Dihydrothymine (2)
Doxofylline (2)
FAD (2)
GABA (2)
Indole (2)
Indolelactic acid (2)
Isoquinoline (2)

First Public Date

2024 (2)
2023 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (10)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (6)
Department of Life Science (4)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (4)
Kyungpook national university (4)
Seoul National University (4)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (3)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (3)
Weill Cornell Medicine - Qatar (3)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
Creative Research Initiatives Center for Epigenetic Code and Diseases, School of Biological Sciences, Seoul National University, Seoul 08826, South Korea (2)
Daegu Catholic University School of Medicine (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Department of Biotechnology, Stem cell and biomaterial engineering Lab, Yonsei University, Republic of Korea. (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (2)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (2)
Fraunhofer Attract Eco’n’OMICs, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Auf dem Aberg 1, 57392 Schmallenberg. (2)
Oregon Hearing Research Center (2)
Prometabio Research Institute, prometabio co., ltd. (2)
Proteomics core facility, Seoul National University Hospital (2)
Weill Cornell Medicine-Qatar (2)
Yonsei university (2)
1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
A*STAR-SRIS (1)
Analytical Biochemistry and Proteomics Unit,IIBCE & Institut Pasteur de Montevideo (1)
Applied Bioinformatics, Department for Computer Science, University of Tuebingen, Sand 14, 72076 Tuebingen,Germany (1)

IsPrivate

False (1)

Modification

15.994915 (5)
57.021464 (4)
-17.026549 (2)
-18.010565 (2)
Not available (1)

Study type

Transcription profiling by array (70)
RNA-seq of coding RNA (24)
ChIP-seq (8)
Unknown experiment type (6)
Transcription profiling by tiling array (5)
Methylation profiling by array (5)
Comparative genomic hybridization by array (4)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
MNase-seq (1)
MicroRNA profiling by high-throughput sequencing (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
ATAC-seq (1)
Hi-C (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1605)
2022 (1504)
2023 (1439)
2024 (1413)
2021 (1390)
2020 (1120)
2019 (795)
2018 (688)
2017 (607)
2016 (543)
2015 (417)
2014 (351)
2026 (280)
2012 (198)
2013 (194)
2011 (149)
2010 (99)
2009 (72)
2008 (52)
2007 (41)
2006 (21)
2005 (15)
2004 (11)
2003 (8)
2001 (5)
2002 (4)
2000 (3)
1999 (3)
1998 (2)
1997 (1)

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Comparative study of the photo‑protective and anti‑melanogenic properties of gomisin D, J and O.

Not available

S-EPMC8600414 | biostudies-literature

Rnf41 is associated with anxiety like behavior, major depression and beta carboline induced seizure

The molecular etiology of invididual differences in complex behavior traits and susceptibility to psychiatric illness remains incomplete. Using an unbiased genetic approach in a mouse model, Quantitative Trait Loci (QTL) influencing anxiety-like behaviors and beta-carboline-induced seizure vulnerabi...

ORGANISM(S): Mus musculus

2010-05-25 | E-GEOD-8641 | biostudies-arrayexpress

J-curve relationship between corrected QT interval and mortality in acute heart failure patients.

Not available

S-EPMC7652667 | biostudies-literature

Highly-Soluble Cyanine J-aggregates Entrapped by Liposomes for In Vivo Optical Imaging around 930 nm.

Not available

S-EPMC6376187 | biostudies-literature

Jubanines F-J, cyclopeptide alkaloids from the roots of Ziziphus jujuba.

Not available

S-EPMC7111685 | biostudies-literature

Specific mitotic chromatin association of the major notch effector RBPJ and its implication for transcriptional memory

From the cell-based investigation, RBPJ is one of the few proteins retained on chromatin during cell division. ChIP-seq experiments were performed to understand the binding pattern of RBPJ between interphase and mitosis and to identify the genes requiring RBPJ binding for the maintenance of transcri...

ORGANISM(S): Mus musculus

2014-05-14 | E-GEOD-45889 | biostudies-arrayexpress

Effect Sizes of Cognitive and Locomotive Behavior Tests in the 5XFAD-J Mouse Model of Alzheimer's Disease.

Not available

S-EPMC10606448 | biostudies-literature

Clusterin/apolipoprotein J attenuates angiotensin II-induced renal fibrosis.

Not available

S-EPMC4141810 | biostudies-literature

Lenticular Imaging: A New Experimental and Quantitative Analysis of Capsular Dynamics, "Choi-Apple View".

Not available

S-EPMC6528741 | biostudies-literature

Characterization of volatile aroma compounds in pak choi.