Choi Min M - OmicsDI

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Unknown (443)
Proteomics (260)
Transcriptomics (59)
Genomics (23)
Metabolomics (19)
Genomic (1)

Organisms

Homo sapiens (152)
Mus musculus (68)
Arabidopsis thaliana (16)
Escherichia coli (12)
Saccharomyces cerevisiae (10)
Danio rerio (9)
Rattus norvegicus (8)
Agrobacterium tumefaciens (4)
Vibrio vulnificus (4)
Gallus gallus (4)
Bos taurus (4)
Paracidovorax citrulli (4)
Oryza sativa (3)
Drosophila melanogaster (3)
Bacteria (3)
Lathyrus oleraceus (3)
Staphylococcus aureus (3)
Xenopus laevis (3)
Schizosaccharomyces pombe (2)
Aedes aegypti (2)
Glycine max (2)
Sus scrofa (2)
Bacillus velezensis (2)
Canis lupus familiaris (2)
Equus caballus (2)
Burkholderia glumae BGR1 (1)
Humulus lupulus (1)
Vibrio vulnificus CMCP6 (1)
Escherichia coli CFT073 (1)
Fusarium graminearum (1)

Repository

pride (257)
biostudies-arrayexpress (73)
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Tissue

Cell culture (62)
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Disease

Disease free (7)
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Technology Type

Mass Spectrometry (257)
Shotgun proteomics (130)
Bottom-up proteomics (55)
Affinity purification coupled with mass spectrometry proteomics (47)
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Gel-based experiment (14)
Mass spectrometry (12)
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SRM/MRM (5)
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NMR spectroscopy (4)
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Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
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HDMSE (1)
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Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
PromethION (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiScanSQ (2)
Bruker (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ Orbitrap Velos Pro (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Q Exactive (1)
TripleTOF 5600 (AB Sciex) (1)
Varian (1)

Publication Date

2024 (38)
2021 (37)
2025 (32)
2026 (32)
2022 (30)
2023 (30)
2020 (24)
2014 (18)
2019 (17)
2013 (15)
2018 (15)
2016 (14)
2015 (14)
2012 (10)
2017 (9)
2011 (7)
2009 (3)
2010 (2)
2008 (2)
2007 (2)

CHEBI ID

CHEBI:28790 (7)
CHEBI:15354 (6)
CHEBI:18012 (6)
CHEBI:26986 (6)
CHEBI:27266 (6)
CHEBI:28300 (6)
CHEBI:15741 (5)
CHEBI:16449 (5)
CHEBI:16680 (5)
CHEBI:16708 (5)
CHEBI:16750 (5)
CHEBI:17015 (5)
CHEBI:17234 (5)
CHEBI:17345 (5)
CHEBI:17562 (5)
CHEBI:17596 (5)
CHEBI:17750 (5)
CHEBI:17992 (5)
CHEBI:18186 (5)
CHEBI:18344 (5)
CHEBI:22653 (5)
CHEBI:24898 (5)
CHEBI:25094 (5)
CHEBI:27897 (5)
CHEBI:28044 (5)
CHEBI:30769 (5)
CHEBI:78320 (5)
CHEBI:15318 (4)
CHEBI:15428 (4)
CHEBI:15698 (4)

Metabolite Name

Lactate (4)
Alanine (3)
Asparagine (3)
Fructose (3)
Glucose (3)
Glycine (3)
N-Acetylneuraminic acid (3)
Proline (3)
Threonine (3)
Uridine (3)
Valine (3)
(R)-3-hydroxybutyrylcarnitine (2)
1-methyladenosine (2)
1-methylnicotinamide (2)
2'-deoxycytidine (2)
2'-deoxyuridine (2)
2-aminoadipic acid (2)
4-pyridoxic acid (2)
Adenine (2)
Aminopterin (2)
Bis(3,5,5-trimethylhexyl) phthalate (2)
CDP-ethanolamine (2)
Caffeic acid (2)
Choline (2)
Cytidine (2)
Dihydrothymine (2)
Doxofylline (2)
FAD (2)
GABA (2)
Indole (2)

First Public Date

2023 (1)

Study type

Transcription profiling by array (38)
ChIP-seq (9)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (4)
DNA-seq (4)
Transcription profiling by tiling array (3)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Plant - High-throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (65)
2023 (56)
2021 (54)
2025 (47)
2020 (43)
2024 (34)
2014 (27)
2019 (24)
2018 (24)
2016 (23)
2013 (22)
2015 (20)
2012 (20)
2017 (17)
2011 (11)
2026 (11)
2010 (5)
2009 (4)
2008 (3)
2007 (3)
2005 (3)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (8)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (5)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (5)
UCSF (4)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (3)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Department of Plant Science and Technology, Chung-Ang University, Anseong, Republic of Korea (3)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (3)
Associate professor, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Creative Research Initiatives Center for Epigenetic Code and Diseases, School of Biological Sciences, Seoul National University, Seoul 08826, South Korea (2)
Daegu Catholic University School of Medicine (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Department of Biochemistry, Soonchunhyang University, College of Medicine, 31 Suncheonhyang 6-gil, Bongmyeong-dong, office# 310, Cheonan-si, Chungcheongnam-do, 31151, Republic of Korea (2)
Department of Biochemistry, Soonchunhyang University, College of Medicine, Cheonan, 31151, Republic of Korea (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (2)
Department of Life Sciences, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea (2)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (2)
Fraunhofer Attract Eco’n’OMICs, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Auf dem Aberg 1, 57392 Schmallenberg. (2)
Laboratory for Cell Biology and Signalling, Division of Molecular Biology, Ruder Boskovic Institute, Zagreb, Croatia (2)
Lymphoid Malignancies Branch Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda, Maryland (2)
Prometabio Research Institute, prometabio co., ltd. (2)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (2)
University of Victoria (2)
Yonsei university (2)
1 Department of Computer Science, Hanyang University, Seoul 04763, Republic of Korea 2 Institute for Artificial Intelligence Research, Hanyang University, Seoul 04763, Republic of Korea (1)
1.Center for Translational Vision Research, Gavin Herbert Eye Institute, Department of Ophthalmology, University of California-Irvine, Irvine, CA 92697, USA 2.Department of Ophthalmic Research, Cleveland Clinic, Cleveland, OH 44195, USA 3.Department of Physiology & Biophysics, School of Medicine, University of California-Irvine, Irvine, CA 92697, USA (1)
1Department of Chemistry & Biochemistry, University of Maryland, College Park, MD 20742 (1)
5Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (1)
A*STAR-SRIS (1)

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Characterization of m-lipin using HDX-MS

This project consists of two experiments. The first is mapping the binding interface between the isolated m-lip domain of mouse lipin and liposomes. The second experiments is mapping the binding interface between full length mouse lipin and liposomes. Looking at the isolated m-lip domain, we found t...

ORGANISM(S): Mus musculus (Mouse)

2021-06-29 | PXD022172 | Pride

Deep Learning-Based Survival Analysis Identified Associations Between Molecular Subtype and Optimal Adjuvant Treatment of Patients With Gastric Cancer.

Not available

S-EPMC6873983 | biostudies-literature

The 15-min Subcellular Proteome

This project integrated data-independent acquisition (DIA) with capillary electrophoresis electrospray ionization mass spectrometry (CE-ESI-MS) to enable fast single-cell proteomics. With <15 min of effective separation time in a bottom-up proteomics setting, this technology returned ~1,200 proteins...

ORGANISM(S): Homo sapiens (Human) Xenopus laevis (African clawed frog)

2024-09-27 | PXD046467 | Pride

Blastomere Proteomics Stem cell Xenopus laevis Mass spectrometry Data independent acquisition Single cell Capillary electrophoresis

Customized Consensus Spectral Library Building for Untargeted Quantitative Metabolomics Analysis with Data Independent Acquisition Mass Spectrometry and MetaboDIA Workflow

Data independent acquisition-mass spectrometry (DIA-MS) coupled with liquid chromatography is a promising approach for rapid, automatic sampling of MS/MS data in untargeted metabolomics. However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions t...

2018-03-26 | MTBLS417 | MetaboLights

Mycobacterium tuberculosis extracellular vesicle proteome

Tuberculosis is a common infectious disease mostly caused by Mycobacterium tuberculosis. M. tuberculosis have been shown to release extracellular vesicles (EVs) containing immunologically active molecules. However, only limited number of proteins has been identified in M. tuberculosis EVs. We presen...

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2015-07-30 | PXD001160 | Pride

Exosomes Mycobacterium tuberculosis Extracellular vesicles Outer membrane vesicles Bacteria

Identifying Novel Small RNA Biomarkers for Patients with Gastric Cancer

The biomarker development study consisted of two parts: discovery and validation. The first part was the discovery and verification phase of biomarkers using two different platforms: transcriptomic and miRNA. The salivary transcriptomes of 63 GC samples and 31 non-GC controls were profiled using ...

phs001767 | dbGaP

Characteristics of steroid hormones in systemic lupus erythematosus revealed by GC/MS-based metabolic profiling

Systemic lupus erythematosus (SLE) is a systemic autoimmune disease with a remarkable predominance in female, suggesting that steroid hormones may be involved in the pathogenesis. Herein, more than 70 kinds of steroids in urine were detected by gas chromatography/mass spectrometry (GC/MS) to reve...

2023-07-28 | MTBLS7766 | MetaboLights

RNA-seq Analysis of RFX1-dependent Genes in Fusarium graminearum Z-3639

Fusarium graminearum is a major pathogen of Fusarium head blight in wheat, barley, and rice, as well as ear rot and stalk rot in maize. Regulatory Factor X (RFX) transcription factors are well-conserved in animals and fungi, but their functions are diverse, ranging from DNA-damage response to ciliar...

ORGANISM(S): Fusarium graminearum

2014-01-28 | E-GEOD-52198 | biostudies-arrayexpress

Differential expression of mRNAs in naM-CM-/ve, effector, and memory CD8 T cells of mir-150 KO and wild-type mice

microRNA-150 (miR-150) is mainly expressed in the lymph nodes and spleen and is highly up-regulated during the development of mature T and B cells. To understand the signal-transduction network for 'effector or memory T cells' and 'mir-150' in naM-CM-/ve, effector, or memory CD8 T cells of mir-150 k...

ORGANISM(S): Mus musculus

2014-10-11 | E-GEOD-62262 | biostudies-arrayexpress

Optimization of Porphyran Extraction from Pyropia yezoensis by Response Surface Methodology and Its Lipid-Lowering Effects.