Choi Y Y - OmicsDI

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Unknown (7966)
Proteomics (163)
Transcriptomics (103)
Genomics (23)
Metabolomics (14)
Genomic (1)

Organisms

Schizophyllum commune H4-8 (147)
Mycobacterium tuberculosis SP7 (147)
Candidatus Endoriftia persephonae (147)
Mycobacterium tuberculosis SP10 (147)
Mycobacterium tuberculosis SP13 (147)
Mycobacterium tuberculosis SP22 (147)
Chlamydomonas reinhardtii (147)
Homo sapiens (62)
Mus musculus (25)
Daphnia pulex (9)
Oryza sativa (4)
Arabidopsis thaliana (4)
Rattus norvegicus (3)
Schizosaccharomyces pombe (2)
Drosophila melanogaster (2)
Chrysanthemum (1)
Colletotrichum higginsianum (1)
Rosa hybrid cultivar (1)
Humulus lupulus (1)
Capsicum annuum (1)
Pan troglodytes (1)
Vitis vinifera (1)
Aedes aegypti (1)
Oryza sativa Japonica Group (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
blank sample (1)
Ancylostoma ceylanicum (1)

Organisms

Lactiplantibacillus plantarum (1)
Mus musculus (1)

Repository

pride (147)
biostudies-arrayexpress (110)
MetaboLights (13)
EGA (11)
MassIVE (10)
ENA (5)
PeptideAtlas (2)
dbGaP (1)
geo (1)
GNPS (1)
iProX (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (34)
Brain (17)
Epithelial cell (15)
Blood plasma (8)
Embryo (7)
Permanent cell line cell (5)
Kidney (5)
Early embryonic cell (4)
Blood serum (4)
B cell (4)
Blood cell (4)
T cell (4)
HEK-293T cell (3)
Skeletal muscle (3)
Fibroblast (3)
Lung (3)
Blood (3)
Others (2)
Endospore (2)
Bone cell (2)
Pancreas (2)
Embryonic stem cell (2)
Egg (2)
Plant cell (2)
Cell suspension culture (2)
Leaf (2)
Liver (2)
B-cell chronic lymphocytic leukemia cell (1)
Neoplastic (1)
Placental villous trophoblast (1)

Disease

Disease free (5)
Malignant neoplasm of ovary (4)
Type 2 diabetes mellitus (4)
Breast cancer (4)
Osteosarcoma (3)
Cervix carcinoma (3)
Parkinson's disease (3)
Colon cancer (3)
Acute leukemia (3)
Brain glioblastoma multiforme (2)
Prostate adenocarcinoma (2)
Lung cancer (2)
Alzheimer's disease (2)
Colorectal carcinoma (1)
Normal (1)
Fanconi anemia complementation group A (1)
Breast secretory carcinoma (1)
Toxic encephalopathy (1)
Lung disease (1)
Diffuse large B-cell lymphoma (1)
Pulmonary neuroendocrine tumor (1)
Cockayne syndrome (1)
Stomach cancer (1)
Severe acute respiratory syndrome (1)
Lung adenocarcinoma (1)
Prostate cancer (1)
Lymphoma (1)
Pancreatic ductal adenocarcinoma (1)
Human immunodeficiency virus infectious disease (1)
Chronic lymphocytic leukemia (1)

Technology Type

Mass Spectrometry (147)
Shotgun proteomics (74)
Affinity purification coupled with mass spectrometry proteomics (28)
Bottom-up proteomics (25)
Data-dependent acquisition (16)
SWATH MS (10)
Gel-based experiment (10)
Top-down proteomics (10)
Mass spectrometry (9)
NMR spectroscopy (4)
Data-independent acquisition (4)
Illumina HiSeq 2500, ILLUMINA (2)
SRM/MRM (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
HDMSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (4)
LTQ Orbitrap Velos (4)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina NovaSeq 6000 (2)
Q Exactive HF (2)
Bruker (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Fusion (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Varian (1)
Gas Chromatography MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2023 (24)
2024 (24)
2026 (23)
2025 (22)
2021 (20)
2010 (18)
2022 (16)
2011 (15)
2008 (15)
2013 (14)
2012 (14)
2020 (13)
2019 (11)
2009 (10)
2016 (9)
2017 (9)
2018 (9)
2015 (8)
2014 (8)
2007 (2)
2004 (2)
2005 (1)

UNIPROT ID/AC

RNK_ECOLI (1)
FUCK_ECOLI (1)
CDAR_ECOLI (1)
YGHG_ECOLI (1)
YDJI_ECOLI (1)
PHNN_ECOLI (1)
NARG_ECOLI (1)
NFRB_ECOLI (1)
RUTA_ECOLI (1)
PHNJ_ECOLI (1)
YTFE_ECOLI (1)
UACT_ECOLI (1)
HTRE_ECOLI (1)
SPRT_ECOLI (1)
YCCT_ECOLI (1)
ARAB_ECOLI (1)
FPG_ECOLI (1)
RUTC_ECOLI (1)
SULA_ECOLI (1)
SSUB_ECOLI (1)
HOFB_ECOLI (1)
PINR_ECOLI (1)
HSCC_ECOLI (1)
HYPC_ECOLI (1)
YDIB_ECOLI (1)
YNBC_ECOLI (1)
YPHE_ECOLI (1)
GRE1_ECOLI (1)
PHND_ECOLI (1)
NIKD_ECOLI (1)

ENSEMBL ID

ENSG00000247315 (2)
ENSG00000147251 (2)
ENSG00000170477 (2)

CHEBI ID

CHEBI:26986 (6)
CHEBI:28300 (6)
CHEBI:27266 (6)
CHEBI:17992 (5)
CHEBI:25094 (5)
CHEBI:22653 (5)
CHEBI:17234 (5)
CHEBI:24898 (5)
CHEBI:17015 (5)
CHEBI:28790 (5)
CHEBI:16449 (5)
CHEBI:18012 (5)
CHEBI:78320 (5)
CHEBI:15354 (5)
CHEBI:17822 (4)
CHEBI:26271 (4)
CHEBI:18237 (4)
CHEBI:18186 (4)
CHEBI:28757 (4)
CHEBI:16708 (4)
CHEBI:17562 (4)
CHEBI:16610 (4)
CHEBI:15741 (4)
CHEBI:28044 (4)
CHEBI:15727 (4)
CHEBI:17750 (4)
CHEBI:24813 (4)
CHEBI:29016 (4)
CHEBI:15318 (4)
CHEBI:17345 (4)

Metabolite Name

Proline (4)
Lactate (4)
Valine (4)
Asparagine (3)
Phenylalanine (3)
Fructose (3)
Threonine (3)
Glucose (3)
Alanine (3)
Beta-D-glucosyl crocetin (2)
(R)-3-hydroxybutyrylcarnitine (2)
Linoleoyl ethanolamide (2)
Gamma-glutamylmethionine (2)
GABA (2)
N1-Methyl-2-pyridone-5-carboxamide (2)
Uridine (2)
Serine (2)
Lysine (2)
Fumarate (2)
Arginine (2)
3-phosphoglycerate (2)
Glutamine (2)
Isoleucine (2)
Glycine (2)
Spermidine (2)
Sucrose (2)
Doxofylline (2)
Valine (2)
Thymine (2)
Kynurenic acid (2)

First Public Date

2026 (1)
2024 (1)
2023 (1)
2020 (1)
2014 (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (15)
Transcription profiling by tiling array (8)
Unknown experiment type (6)
Comparative genomic hybridization by array (4)
ChIP-seq (4)
RNA-seq of non coding RNA (4)
DNA-seq (2)
ATAC-seq (1)
Hi-C (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1034)
2022 (963)
2023 (900)
2021 (881)
2024 (835)
2020 (686)
2019 (461)
2018 (414)
2016 (356)
2017 (329)
2015 (268)
2014 (193)
2026 (149)
2012 (123)
2013 (122)
2011 (100)
2010 (83)
2008 (59)
2009 (52)
2007 (21)
2005 (15)
2006 (13)
2004 (5)
2003 (3)
2002 (3)
1998 (3)
1999 (2)
2001 (1)
2000 (1)
1997 (1)

Lab affiliation

IBS, KAIST (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (4)
Seoul National University (3)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Center for Theragnosis, Korea Institute of Science and Technology, Seoul, Korea (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
Daegu Catholic University School of Medicine (2)
Proteomics core facility, Seoul National University Hospital (2)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
Institute for Systems Biology (2)
Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (2)
Applied Science and Technology Department–BioSolar Lab, Politecnico di Torino,Italy (1)
Department of Pediatrics, Childhood Asthma Atopy Center, Environmental Health Center, Asan Medical Center, University of Ulsan College of Medicine, Seoul 05505, Republic of Korea (1)
Baylor College of Medicine Houston, Texas (1)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Institute of Molecular and Cell Biology, ASTAR (1)
Donnelly Centre, University of Toronto Lunenfeld-Tanenbaum Research Institute, Sinai Health System (1)
Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Facutly of Science, University of Geneva (1)
College of Pharmacy, Kyungpook National University (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Seoul National University IBS (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology, Seoul National University, Seoul 03080, Republic of Korea (1)
Director, Advanced Clinical Biosystems Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048 (1)
Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea. School of Biological Sciences, Seoul National University, Seoul, Republic of Korea. (1)

Tags

xref:PubMed:21275795 (1)
xref:PubMed:31747330 (1)
xref:PubMed:34316477 (1)
xref:PubMed:15671270 (1)

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Transcription profiling of rat kidney progenitor tissue from embryo at E13

In this study we compared genes expressed in the unbudded portion of the Wolffian duct with the isolated ureteric bud to find genes novel to early kidney development. We used the Affymetrix Rat Genome 230 2.0 Array to compare the unbudded tissues with the budded samples. We used microarrays to find...

ORGANISM(S): Rattus norvegicus

2009-12-19 | E-GEOD-18260 | biostudies-arrayexpress

Prevalence of Y chromosome microdeletions among infertile Mongolian men.

Not available

S-EPMC9184878 | biostudies-literature

Gene organization of the liverwort Y chromosome reveals distinct sex chromosome evolution in a haploid system.

Not available

S-EPMC1851093 | biostudies-literature

Small molecule Y-320 stimulates ribosome biogenesis, protein synthesis, and aminoglycoside-induced premature termination codon readthrough.

Not available

S-EPMC8118496 | biostudies-literature

Physiological responses of pak choi (Brassica Rapa subsp. Chinensis (L.) Hanelt) to cerium and yttrium in two acidic soils with contrasting textures.

Not available

S-EPMC12824321 | biostudies-literature

Transcription profiling of human CD133+ immature blasts from patients with AML/RAEB

CD133-positive immature blasts were purified from bone marrow of the patients. Total RNA was extracted by RNeasy mini spin column (Qiagen, Inc). SUBMITTER_CITATION: Yamashita Y, Ohashi J, Hirai Y, Choi YL, Kaneda R, Fujiwara S-i, Arai Y, Akutsu M, Tsutsumi C, Miyazaki Y, Usuki K, Teramura M, Mitani ...

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-1427 | biostudies-arrayexpress

Structural basis of neuropeptide Y signaling through Y1 receptor.

Not available

S-EPMC8844075 | biostudies-literature

Characterization of volatile aroma compounds in pak choi.

Not available

S-EPMC11399562 | biostudies-literature

A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila.

Not available

S-EPMC10567549 | biostudies-literature

Elevated Neuropeptide Y in Endothelial Dysfunction Promotes Macrophage Infiltration and Smooth Muscle Foam Cell Formation.