Chromatin configuration

Show results for

Transcriptomics (3128)
Genomics (1222)
Unknown (337)
Other (51)
Proteomics (25)
Methylation profiling (7)
Multiomics (2)
Metabolomics (1)

Organisms

Homo sapiens (941)
Mus musculus (858)
Caenorhabditis elegans (347)
Arabidopsis thaliana (334)
Drosophila melanogaster (255)
Saccharomyces cerevisiae (179)
Rattus norvegicus (112)
Schizosaccharomyces pombe (72)
Danio rerio (60)
Gallus gallus (44)
Oryza sativa (38)
Sus scrofa (35)
Zea mays (28)
Bos taurus (27)
Rhizobium leguminosarum (26)
Candida albicans (21)
Triticum aestivum (21)
Streptomyces venezuelae (15)
Escherichia coli (15)
Oryza sativa Japonica Group (13)
Solanum lycopersicum (12)
Vitis vinifera (11)
Burkholderia cenocepacia (11)
Streptomyces coelicolor A3(2) (10)
Glycine max (10)
Escherichia coli str. K-12 substr. MG1655 (10)
Methanococcus maripaludis S2 (9)
Sinorhizobium meliloti (9)
Oncorhynchus nerka (8)
Streptomyces coelicolor (8)

Organisms

Mus musculus (106)
Homo sapiens (95)
Saccharomyces cerevisiae (9)
Schizosaccharomyces pombe (4)
Adineta vaga (3)
Drosophila melanogaster (3)
Arabidopsis thaliana (3)
Oryza sativa Japonica Group (3)
Bos indicus x Bos taurus (2)
Caenorhabditis elegans (2)
Danio rerio (2)
Rattus norvegicus (2)
Bos taurus (2)
Mus musculus musculus x Mus musculus castaneus (1)
Mus musculus domesticus x M. m. molossinus (1)
Pneumocystis sp. 'macacae' (1)
Phallusia mammillata (1)
Neurospora crassa (1)
Canis lupus familiaris (1)
Candida albicans (1)
Oryza sativa (1)
Ciona intestinalis (1)

Repository

biostudies-arrayexpress (3873)
ENA (285)
geo (253)
MassIVE (11)
pride (11)
EGA (6)
jPOST (3)
EVA (2)
GPMDB (1)
MetaboLights (1)

Tissue

Cell culture (4)
Colon (1)
Embryonic stem cell (1)
HeLa cell (1)
Macrophage (1)
Oocyte (1)
Ovary cancer cell line (1)
Plant cell (1)

Disease

Normal (32)
Melanoma (4)
Prostate cancer (2)
Breast cancer (2)
Neuroblastoma (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Aortic aneurysm (1)
Toxicity (1)
HPV positive (1)
Responder to preoperative radiotherapy (1)
Ovarian carcinoma (1)
Diabetes mellitus type 1 (1)
Dermal neurofibroma (1)
Hepatomegaly (1)
Epithelioid mesothelioma (1)
Large cell carcinoma (1)
Invasive pituitary adenoma (1)
Breast Carcinoma (1)
CUP (1)
Ependymoma (1)
Primary medulloblastoma (1)
S. mansoni - exposed (1)
Low-stage neuroblastoma (1)
Keratoconus (1)
Schistosome-exposed (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Mock 24 h (1)
Schizophrenia (1)
Insulin resistance (1)
Infected (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (2)
Mass spectrometry (1)
Bottom-up proteomics (1)
Gel-based experiment (1)
MSE (1)

Instrument Platform

Illumina NovaSeq 6000 (111)
NextSeq 500 (94)
Illumina HiSeq 2000 (83)
Illumina HiSeq 2500 (72)
Illumina HiSeq 4000 (51)
NextSeq 550 (28)
Illumina MiSeq (25)
Illumina HiSeq 1500 (14)
Ion Torrent Proton (13)
NextSeq 2000 (13)
Axon GenePix 4000B scanning hardware (11)
Illumina NovaSeq X (10)
Illumina HiSeq 3000 (9)
Chromium 10x (8)
NextSeq 1000 (8)
Illumina Genome Analyzer IIx (7)
Illumina Genome Analyzer II (7)
Axon GenePix 4000A scanning hardware (6)
AB SOLiD 4 System (5)
ArrayWoRx Biochip Reader [Applied Precision] (5)
Vortex (5)
ScanArray Express HT [PerkinElmer] (4)
HiSeq X Ten (4)
Ion Torrent S5 XL (4)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (3)
DASGIP bioreactors (3)
Affymetrix GeneChip Scanner 3000 7G (3)
GeneChip Scanner 3000 [Affymetrix] (3)
GenePix 4000A [Axon Instruments] (3)
Axon- GenePix4000B (3)

Publication Date

2013 (619)
2010 (463)
2011 (406)
2014 (383)
2015 (367)
2012 (366)
2016 (248)
2009 (153)
2008 (146)
2025 (113)
2023 (99)
2022 (97)
2021 (97)
2020 (87)
2019 (84)
2007 (80)
2024 (71)
2026 (63)
2018 (52)
2017 (49)
2006 (48)
2005 (43)
2004 (18)

Metabolite Name

N-Acetyl-?-D-glucosamine 1-phosphate (1)
Uridine 5'-diphosphoglucuronic acid (1)
3'-Adenosine monophosphate (3'-AMP) (1)
Guanosine monophosphate (GMP) (1)
D-(-)-Mannitol (1)
(2R)-2,3-Dihydroxypropanoic acid (1)
DL-Lactic Acid (1)
4-Phenolsulfonic acid (1)
Uridine monophosphate (UMP) (1)
UDP-N-acetylglucosamine (1)
Glycodeoxycholic acid (1)
Glycolic acid (1)
L-Aspartic acid (1)
Glycochenodeoxycholic acid (1)
Gluconic acid (1)
D-(+)-Malic acid (1)
Inosine-5'-monophosphate (IMP) (1)
Adenosine 5'-monophosphate (1)
L-Histidine (1)
L-Glutamic acid (1)
N-Acetylneuraminic acid (1)
Taurine (1)
Xanthosine (1)
Tauroursodeoxycholic acid (1)
D-Ribulose 5-phosphate (1)
Ascorbic acid (1)
Adenosine diphosphate (ADP) (1)
4-Oxoproline (1)
Glycocholic acid (1)
D-(+)-Mannose (1)

First Public Date

2023 (39)
2025 (33)
2024 (31)
2022 (24)
2026 (21)
2021 (21)
2019 (19)
2013 (19)
2014 (17)
2020 (16)
2018 (16)
2016 (13)
2017 (8)
2015 (8)

Classification

fungi (1)

Modification

N6 (2)

Study type

Transcription profiling by array (1702)
ChIP-seq (764)
RNA-seq of coding RNA (391)
ChIP-chip by tiling array (289)
ChIP-chip by array (91)
RNA-seq of coding RNA from single cells (91)
RNA-seq of non coding RNA (69)
Comparative genomic hybridization by array (51)
Transcription profiling by tiling array (40)
Other (40)
Methylation profiling by array (35)
Methylation profiling by high throughput sequencing (33)
DNA-seq (28)
ATAC-seq (27)
Unknown experiment type (25)
Cell line - High-throughput sequencing (17)
Hi-C (15)
High-throughput sequencing (14)
RNA-seq of total RNA (14)
Single nucleus RNA sequencing (13)
MicroRNA profiling by array (12)
Animal - High-throughput sequencing (11)
ScATAC-seq (11)
Plant - High-throughput sequencing (8)
Genotyping by array (7)
Animal - One-color microarray (5)
CUT&RUN (5)
Cell line - One-color microarray (4)
Capture-C (4)
MicroRNA profiling by high throughput sequencing (4)

Release Date

2013 (620)
2010 (469)
2011 (416)
2014 (393)
2015 (373)
2012 (372)
2016 (256)
2009 (159)
2008 (153)
2025 (108)
2021 (98)
2022 (97)
2020 (93)
2023 (92)
2007 (84)
2019 (76)
2024 (69)
2017 (63)
2018 (57)
2006 (48)
2026 (47)
2005 (45)
2004 (20)
2002 (1)
2001 (1)

Lab affiliation

Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY (1)
Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, 233 S 10th Street, BLSB 826, Philadelphia, PA, 19104 (1)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan 20139, Italy (1)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (1)
Desert Agriculture Initiative 4700 King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia (1)
European Institute of Oncology (1)
European Institute of Oncology IRCCS, 20139 Milan, Italy (1)
Functional Proteomics, ICR (1)
Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (1)
Talus Bio (1)

Previous page
1 / 479
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 479
Next page

Sort by:

Relevance

Page size

quantitative proteomic analysis of mouse oocyte of different chromatin configurations

Chromatin configuration serves as a principal indicator of GV (germinal vesicle)-stage oocyte quality. In this study, a quantitative proteomics method was applied to investigate the the underlying mechanisms governing the chromatin configuration.

ORGANISM(S): Mus musculus (Mouse)

2024-10-17 | PXD048173 | Pride

Bovine cumulus cells transcriptome in relation with oocyte chromatin configuration of the germinal vesicle

Gene expression analysis in cc from COCs with different chromatin configuration (GV0-3) Bovine cumulus cells (4 biological replicates) were collected and grouped according to the oocyte different chromatin configuration of the germinal vesicle described by Lodde et al. 2007. Four GV stages correspon...

ORGANISM(S): Bos taurus

2016-04-04 | E-GEOD-79886 | biostudies-arrayexpress

The chromatin accessibility landscape of mouse oocytes during configuration transition

PRJNA1089931 | ENA

Transcription profiling of mouse germline during spermatogenesis reveals X and Y occupy a novel compartment in the post-meiotic spermatid and adopt a non-Rabl configuration

In mammals, the X and Y chromosomes are subject to meiotic sex chromosome inactivation (MSCI) during prophase I in the male germline, but their status thereafter is currently unclear. An abundance of X-linked spermatogenesis genes has spawned the view that the X must be active [1-8]. On the other ha...

ORGANISM(S): Mus musculus

2007-12-07 | E-GEOD-4193 | biostudies-arrayexpress

The chromatin accessibility landscape of mouse oocytes during configuration transition [BS-seq]

PRJNA1091378 | ENA

The chromatin accessibility landscape of mouse oocytes during configuration transition (CUT&Tag)

PRJNA1090928 | ENA

The chromatin accessibility landscape of mouse oocytes during configuration transition (RNA-Seq)

PRJNA1090930 | ENA

The landscape of accessible chromatin in mammalian pre-implantation embryos

In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessib...

ORGANISM(S): Mus musculus

2016-06-15 | E-GEOD-66390 | biostudies-arrayexpress

Chromatin remodeling and histone mRNA accumulation in bovine germinal vesicle oocytes

The objective of the study was to compare the transcriptome of the bovine oocyte according to the chromatin configuration of the germinal vesicule Bovine oocyte (4 biological replicates) were collected and grouped according to the different chromatin configuration of the germinal vesicule described ...

ORGANISM(S): Bos taurus

2015-05-05 | E-GEOD-48376 | biostudies-arrayexpress

MIB2 Functions in Oocyte Meiosis by Modulating Chromatin Configuration.

Not available

S-EPMC11364126 | biostudies-literature

Previous page
1 / 479
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 479
Next page

Sort by:

Relevance

Page size

4783 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets