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MetabolomicsDeep functional analysis of synII, a 770 kb synthetic yeast chromosome
Here we report the design, construction and characterization of a 770 Kb synthetic yeast chromosome II (synII). With the UPLC-MS method, we demonstrated synII maintains a nearly wild-type phenotype and fitness despite hundreds of designer editing to it. Our phenomics, transcriptomics, proteomics dat...
2016-10-13 | MTBLS296 | MetaboLights
TranscriptomicsGene expression analysis of interspecific and intraspecific Y chromosome introgessions in Drosophila simulans
These arrays measure gene expression across eight Y introgression lines in Drosophila simulans. Four lines (Ya19, Ya23, Ya24, Ya26) carry a D. simulans Y chromosome (from a Cameroon population) and four lines (Sec01, Sec03, Sec08, Sec27) carry a D. sechellia Y chromosome. All lines are otherwise ide...
ORGANISM(S): Drosophila simulans 
2011-09-29 | E-GEOD-31907 | biostudies-arrayexpress
GenomicsY chromosome alignment
Variations on the Y chromosome from 44 samples
EGAD00010001573 | EGA
TranscriptomicsPlant Y-chromosome degeneration is retarded by haploid purifying selection.
Sex chromosomes evolved many times independently in many different organisms. According to the currently accepted model, X- and Y-chromosomes evolve from a pair of autosomes via a series of inversions leading to step-wise expansion of a non-recombining region on the Y chromosome (NRY) and the conseq...
ORGANISM(S): Silene vulgaris 
2012-07-30 | E-GEOD-30958 | biostudies-arrayexpress
ProteomicsDDX3Y and other Male Specific Region of Y Chromosome Genes may modulate neuronal differentiation and mediate various biological pathways in addition to their well described role regulating spermatogenesis
Human tissue based proteomics projects are challenging due to low abundance of proteins and tissue specificity of protein expression. In this study, we aimed to develop a cell-based approach to profile the male specific region of the Y chromosome (MSY) proteins. First, we profiled the expression of ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-06-10 | MSV000083949 | MassIVE
MetabolomicsIdentification and Molecular analysis of the Y-specific CpMp gene controlling long male peduncles in papaya

Papaya is a fruit crop possessing XY sex chromosomes. The development of long 

male peduncles (Mp) is pivotal for the evolutionary transition from gynodioecy to 

dioecy. The gene, CpMp, which controls peduncle length, is one of the four genes 

contributing to...

2025-10-20 | MTBLS13183 | MetaboLights
TranscriptomicsGene expression variation in Y-chromosome substitution lines of Drosophila melanogaster
These arrays were done in the context of a study to probe gene expression variation across Y-chromosome substitution lines of Drosophila melanogaster Keywords: polymorphism, evolution, chromosome substitution This series contains all the arrays and designs described in Lemos et al.
ORGANISM(S): Drosophila melanogaster 
2008-04-29 | E-GEOD-9457 | biostudies-arrayexpress
GenomicsIYDP Indonesian Y chromosome Diversity Project
Island Southeast Asia and Oceania host one of the world’s richest assemblages of human phenotypic, linguistic and cultural diversity. We compiled ~9.7 Mb of Y chromosome sequence from a diverse sample of over 380 men from this region, including 126 from Indonesian islands, first reported here. ...
EGAS00001006028 | EGA
GenomicsChromosome Y Philogeny in Sardinia
Genetic variation within the male specific portion of the Y chromosome (MSY) can clarify the origins of contemporary populations, but previous studies were hampered by partial genetic information. Population sequencing of 1,204 Sardinian males identified 11,763 MSY single nucleotide polymorphisms (S...
EGAS00001000532 | EGA
GenomicsPapuan Y chromosome Diversity Panel
Island Southeast Asia and Oceania host one of the world’s richest assemblages of human phenotypic, linguistic and cultural diversity. Despite this, the region’s male genetic lineages are globally among the last to remain unresolved. We compiled ~9.7 Mb of Y chromosome sequence from a diver...
EGAS00001006025 | EGA
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