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TranscriptomicsNOT2 proteins promote Pol II-dependent transcription and interact with multiple miRNA biogenesis factors in Arabidopsis
MicroRNAs (miRNAs) play key regulatory roles in numerous developmental and physiological processes in animals and plants. The elaborate mechanism of miRNA biogenesis involves transcription and multiple processing steps. Here, we report the identification of a pair of evolutionarily conserved NOT2_3_...
ORGANISM(S): Arabidopsis thaliana 
2013-01-30 | E-GEOD-42901 | biostudies-arrayexpress
TranscriptomicsRoles of RDR701 and DCLs in Rice PhasiRNA biogenesis
In this study, we analyzed function of the rice RDR701 and various DCLs proteins in small RNA processing. small RNA deep sequencing analyses revealed that RDR701 and OsDCL4 is involved in tasiRNAs and 21- and 24-nt phasiRNAs biogenesis. Further analyses indicate RDR701 coupling with OsDCL4 and OsDCL...
ORGANISM(S): Oryza sativa 
2012-07-02 | E-GEOD-26405 | biostudies-arrayexpress
TranscriptomicsDCL4-Dependent Clusters of PhasiRNAs in Rice.
The osdcl4-1 mutant exhibits much severer developmental defects than dcl4 in Arabidopsis, suggesting that Os DCL4 may process broader substrates in rice. By deep sequencing of small RNAs from different tissues of wild types and osdcl4-1, we revealed that 21-nucleotide siRNAs were largely dependent o...
ORGANISM(S): Oryza sativa 
2012-03-29 | E-GEOD-22763 | biostudies-arrayexpress
ProteomicsNatural variations of SLG1 confer high-temperature tolerance in indica rice
Natural variations of SLG1 confer high-temperature tolerance in indica rice
ORGANISM(S): Oryza Sativa 
PXD021698 |
TranscriptomicsActivating of jasmonic acid pathway through depletion of rice hydroperoxide lyase OsHPL3 revealed a crosstalk between HPL- and AOS-branch oxylipin pathways in rice
The allene oxide synthase (AOS) branch and the hydroperoxide lyase (HPL) branch of the oxylipin pathway function in plant responses to diverse stresses and have potential cross-talks between each other in the biosynthesis and signaling regulation, but there is still an absence of direct evidence and...
ORGANISM(S): Oryza sativa Japonica Group 
2013-08-21 | E-GEOD-40242 | biostudies-arrayexpress
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