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TranscriptomicsTranscription profiling of human 48 clinical breast cancer arrays to perform statistical identification of gene association by CID in application of constructing ER regulatory network
A variety of high-throughput techniques are now available for constructing comprehensive gene regulatory networks in systems biology. In this study, we report a new statistical approach for facilitating in silico inference of regulatory network structure. The new measure of association, coefficient ...
ORGANISM(S): Homo sapiens 
2009-07-19 | E-GEOD-17041 | biostudies-arrayexpress
MetabolomicsMetabolomics analysis of zebrafish response to CID661578 treatment
Not available
ORGANISM(S): Danio rerio 
ST002119 | MetabolomicsWorkbench
TranscriptomicsThe gene expression changes by CID 70698683
CID 70698683 is a novel broad-spectrum antiviral compound. To understand the broad-spectrum antiviral mechanism, the cellular gene expression changes by the treatment of CID70698683 was measured. HEp-2 cells grown in 6-well plates were treated with 5 microM of CID 70698683 for overnight and the cell...
ORGANISM(S): Homo sapiens 
2015-11-25 | E-GEOD-72167 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of yeast treatment with rapamycin and compound CID 3528206
Compound CID 3538206 inhibits yeast TORC1 activity and functionally mimic rapamycin. We used microarrays to compare the global gene expression with the treatment of CID 3528206 and rapamycin. BY4741 yeast cells were treated with1% DMSO, 20 uM CID 3528206 and 200 nM rapamycin in duplicate for 3hrs. ...
ORGANISM(S): Saccharomyces cerevisiae 
2012-04-30 | E-GEOD-33320 | biostudies-arrayexpress
GenomicsChIP-Seq of fly Schneider S2 cells to investigate CID islands
The centromere-specific Histone H3-variant CENH3 (also known as CENP-A) is considered to be an epigenetic mark for establishment and propagation of centromere identity. Pulse-induction of CENH3 (Drosophila CID) in Schneider S2 cells incorporates into noncentromeric regions and generates CID islands ...
ORGANISM(S): Drosophila melanogaster 
2011-07-15 | E-MTAB-652 | biostudies-arrayexpress
GenomicsCID island ChIP
CID island ChIP
PRJEB2523 | ENA
ProteomicsComplementary CID and 351 nm UVPD tandem mass spectra enable effective de novo sequencing
This dataset accompanies a publication in which we present a strategy for acquisition and effective de novo peptide sequencing of complementary CID and 351 nm ultraviolet photodissociation (UVPD) MS/MS pairs. E. coli whole cell lysate is carbamylated to block lysine side chains, digested with trypsi...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2017-03-06 | MSV000080603 | MassIVE
GenomicsEpigenome analysis of 65 CID cases
Epigenome analysis of 65 CID cases
PRJNA701235 | ENA
TranscriptomicsGene expression changes induced by dimerization of intracellular c-Mpl in cord blood CD34+ progenitors
Homodimerization of Mpl can also be accomplished in the absence of Tpo, by binding of a synthetic ligand (Chemical inducer of dimerization, CID) to a constitutively expressed fusion protein F36VMpl consisting of a ligand binding domain (F36V) and the intracellular signaling domain of Mpl. In contras...
ORGANISM(S): Homo sapiens 
2011-08-31 | E-GEOD-30585 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of prostate from mice at different stages of JOCK1 prostate cancer progression to identify FGFR1-mediated gene expression changes
FGFR1 mediated changes in gene expression at different stages of JOCK1 prostate cancer progression JOCK1 mice which express a prostate localize inducible version of the FGFR1 gene (iFGFR1) were used to determine what are the changes in gene expression at distinct stages of JOCK1 tumor progression. ...
ORGANISM(S): Mus musculus 
2008-03-04 | E-MEXP-1296 | biostudies-arrayexpress
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