Citrobacter freundii - OmicsDI

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Citrobacter freundii (208)
Citrobacter portucalensis (9)
Citrobacter braakii (6)
Enterobacteriaceae (3)
Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 (3)
Citrobacter freundii complex (2)
Citrobacter freundii IFO 13545 (2)
Citrobacter freundii CFNIH1 (2)
Citrobacter (2)
Citrobacter freundii str. ballerup 7851/39 (1)
Citrobacter sp. A316 (1)
Citrobacter freundii ADS47 (1)
Citrobacter freundii CF74 (1)
Citrobacter freundii SBS 197 (1)
Citrobacter freundii 47N (1)
Citrobacter freundii RLS1 (1)
Citrobacter freundii GTC 09629 (1)
Citrobacter freundii GTC 09479 (1)
Citrobacter freundii UCI 31 (1)
Citrobacter freundii str. harit D11 (1)
Citrobacter phage phiCFP-1 (1)
Citrobacter pasteurii (1)
Citrobacter freundii complex sp. MUD-KCA28 (1)
Citrobacter freundii MGH 56 (1)
Citrobacter freundii Pi_15 (1)
Citrobacter youngae (1)
Cereibacter sphaeroides (1)
Enterobacter kobei (1)
Andrias davidianus (1)
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CHEBI ID

CHEBI:15603 (3)
CHEBI:15318 (2)
CHEBI:15682 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16349 (2)
CHEBI:16467 (2)
CHEBI:16610 (2)
CHEBI:16643 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
CHEBI:16828 (2)
CHEBI:16919 (2)
CHEBI:16927 (2)
CHEBI:17196 (2)
CHEBI:17345 (2)
CHEBI:17562 (2)
CHEBI:17596 (2)
CHEBI:18019 (2)
CHEBI:18050 (2)
CHEBI:18107 (2)
CHEBI:26806 (2)
CHEBI:27248 (2)
CHEBI:27468 (2)
CHEBI:27823 (2)
CHEBI:28790 (2)
CHEBI:32816 (2)
CHEBI:89825 (2)
CHEBI:125405 (1)
CHEBI:132983 (1)

Metabolite Name

(S)-2-Hydroxyglutarate (1)
1,3,5(10)-Estratrien-3,17beta-diol 17-glucosiduronate (1)
1,3-bisphospho-D-glyceric acid (1)
1,7-Dimethylxanthine (1)
1-Hexadecanoyl-sn-glycero-3-phosphoethanolamine (1)
16-Hydroxypalmitic acid (1)
2-Dehydro-3-deoxy-D-gluconate (1)
2-Hydroxy-3-methylbutyric acid (1)
2-Isopropylmalic acid (1)
2-Methylguanosine (1)
2-oxoglutarate (1)
3-Hydroxycapric acid (1)
3-Hydroxydodecanoic acid (1)
3-Hydroxymandelic acid (1)
3-keto-L-gulonic acid (1)
3-methylcytidine (1)
4-Pyridoxic acid (1)
5,2'-O-dimethyluridine (1)
5-Amino-4-carbamoylimidazole (1)
5-Hydroxyindoleacetate (1)
5-Hydroxytryptophol (1)
5-L-Glutamyl-L-alanine (1)
5-Methylcytidine (1)
Acadesine (1)
Adenine (1)
Adenosine 3',5'-cyclic monophosphate (1)
Adipic acid (1)
Alpha-D-Glucose 1,6-bisphosphate (1)
Alpha-N-Phenylacetyl-L-glutamine (1)
Aminopterin (1)

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Classification

bacteria (257)
viruses (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (9)
Animal - High-throughput sequencing (1)
Other (1)
ChIP-seq (1)

Release Date

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2003 (4)
1998 (4)
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1999 (3)
2007 (2)
2000 (2)
1995 (1)

Lab affiliation

Laboratory for Applied Science and Technology in Health, Carlos Chagas Institute, Fiocruz Parana, Parana, Brazil (1)
Pacific Northwest National Laboratory (1)
Pacific Northwest National Laboratory, USA (1)
Peter Lasch, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
Robert Koch Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
University of Ljubljana, Biotechnical Faculty, Department of biology, Chair of biochemistry, Večna pot 111, 1000 Ljubljana (1)

Tags

pathogen (258)
pathogen:bacterium (257)
xref:EuropePMC:PMC9295903 (2)
xref:EuropePMC:PMC8887563 (2)
xref:EuropePMC:PMC11400972 (2)
xref:PubMed:23405287 (1)
xref:PubMed:11150665 (1)
xref:PubMed:25687346 (1)
xref:PubMed:19897651 (1)
xref:PubMed:28433744 (1)
xref:PubMed:29346622 (1)
xref:EuropePMC:PMC10353422 (1)
xref:EuropePMC:PMC10103531 (1)
xref:EuropePMC:PMC9679747 (1)
xref:EuropePMC:PMC10469622 (1)
xref:EuropePMC:PMC9059874 (1)
xref:EuropePMC:PMC8511708 (1)
xref:EuropePMC:PMC10193520 (1)
xref:EuropePMC:PMC10060806 (1)
xref:EuropePMC:PMC9769852 (1)
xref:EuropePMC:PMC8117775 (1)
xref:EuropePMC:PMC9638918 (1)
xref:EuropePMC:PMC9295573 (1)
xref:EuropePMC:PMC7466660 (1)
xref:EuropePMC:PMC5884925 (1)
xref:EuropePMC:PMC7225525 (1)
xref:EuropePMC:PMC6658682 (1)
xref:EuropePMC:PMC5961450 (1)
xref:EuropePMC:PMC7596063 (1)
xref:EuropePMC:PMC10250652 (1)

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Analysis of the evolutionary adaptation of an AraC-like global regulatory protein in the murine enteric pathogen Citrobacter rodentium

An experiment to test the equivalence of the Citrobacter rodentium RegA and E.Coli SMS 3-5 homologue 8 Conditions (4 Genotypes by 2 treatments) in duplicate. Reference design without dye swaps.

ORGANISM(S): Citrobacter rodentium

2015-02-19 | E-GEOD-57689 | biostudies-arrayexpress

Citrobacter freundii

Citrobacter freundii Genome sequencing and assembly

PRJNA544639 | ENA

Citrobacter freundii

Citrobacter freundii Genome sequencing

PRJNA1087705 | ENA

Citrobacter freundii

Citrobacter freundii Raw sequence reads

PRJNA562842 | ENA

Control of Virulence Gene Expression in Citrobacter rodentium by Trascription Factor RegA

Identification of the targets of RegA with and without bicarbonate stimulation by comparing RegA knockout to multicopy RegA transgenics. RegA is an AraC like transcription factor identified in a mutational screen for virulence genes in Citrobacter rodentium, an attaching and effacing pathogen that ...

ORGANISM(S): Citrobacter rodentium

2010-05-19 | E-GEOD-12876 | biostudies-arrayexpress

Citrobacter freundii

Citrobacter freundii overview

PRJNA48207 | ENA

Citrobacter freundii

Citrobacter freundii Assembly

PRJNA589496 | ENA

Citrobacter freundii

Citrobacter freundii Genome sequencing

PRJNA1123630 | ENA

Citrobacter freundii

Citrobacter freundii Genome sequencing

PRJNA932149 | ENA

Citrobacter freundii

Citrobacter freundii Genome sequencing

PRJNA1491079 | ENA

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