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ProteomicsIn situ evidence of tiered adaptations buffering a chemosynthetic clam holobiont against environmental sulfide fluctuations
In situ transplant experiments at HM-3 and HM-2 sites within Haima Seep help gain insights into how deep-sea clam holobiont cope with different level of sulfide shortage.
ORGANISM(S): Archivesica marissinica 
2026-08-26 | PXD076399 | Pride
Omics In situ transplantation Haima seep Host–symbiont interaction Sulfide shortage Vesicomyid 
TranscriptomicsTranscriptome analysis of Manila clam (Ruditapes philippinarum) digestive gland after exposure to different concentrations of ibuprofen.
A Ruditapes philippinarum microarray platform was developed to identify digestive gland gene expression profiles in response to 100 µg /l and 1000 µg/l ibuprofen exposure. A comparative analysis of gene expression was conducted in Manila clam R.philippinarum exposed to ibuprofen.Clams were exposed...
ORGANISM(S): Ruditapes philippinarum 
2013-10-01 | E-GEOD-38863 | biostudies-arrayexpress
GenomicsMacoma clam stomach metabarcoding
Macoma clam stomach metabarcoding Raw sequence reads
PRJNA1190063 | ENA
GenomicsRuditapes philippinarum cultivar:manila clam
Ruditapes philippinarum cultivar:manila clam Raw sequence reads
PRJNA579230 | ENA
GenomicsManila clam - Perkinsus olseni interaction based on gene expression analysis of clam hemocytes and parasite trophozoites [Manila clam]
Manila clam - Perkinsus olseni interaction based on gene expression analysis of clam hemocytes and parasite trophozoites [Manila clam]
PRJNA596188 | ENA
TranscriptomicsComparison of gene expression profile of Ruditapes philippinarum sampled in Marghera and Alberoni
Digestive Gland Samples: A manila clam oligo microarray platform (GPL10900) was used to profile gene expression in digestive gland of R. philippinarum. Total RNA was extracted from three (3) independent biological replicates of digestive gland for each sampling site, each consisting of tissue pools ...
ORGANISM(S): Ruditapes philippinarum 
2012-08-25 | E-GEOD-27194 | biostudies-arrayexpress
TranscriptomicsManila clam - Perkinsus olseni interaction based on gene expression analysis of clam hemocytes and parasite trophozoites [Manila clam]
The Manila clam (Ruditapes philippinarum) is the bivalve species with the highest world production from both fisheries and aquaculture, but its production is seriously threatened by perkinsosis, a disease caused by the protozoan parasite Perkinsus olseni. To understand the molecular mechanisms under...
ORGANISM(S): Ruditapes philippinarum 
2019-12-18 | GSE142172 | GEO
TranscriptomicsTRANSCRIPTIONAL CHANGES IN HARD CLAM (MERCENARIA MERCENARIA) IN RESPONSE TO QPX DISEASE AND TEMPERATURE
Transcriptional profiling of different clam tissues (hemolymph and mantle) in response to QPX disease and temperautre Quahog Parasite Unknown (QPX) is a fatal protistan parasite that causes severe losses in the hard clam (Mercenaria mercenaria) fisheries along the northeastern coast of the US. Field...
ORGANISM(S): Mercenaria mercenaria 
2015-12-20 | E-GEOD-76182 | biostudies-arrayexpress
GenomicsEndozoicomonas sp. Mp262 isolate:sea clam tissue
Endozoicomonas sp. Mp262 isolate:sea clam tissue Genome sequencing
PRJNA808684 | ENA
TranscriptomicsMicroarray development for the Grooved carpet shell clam, Ruditapes decussatus: Functional approach to host parasite interaction
An R.decussatus microarray platform was developed to to profile gene expression in R. decussatus heavy infected by Perkinsus olseni A comparative analysis of gene expression was conducted between Grooved carpet shell clam R. decussatus individuals for non infected and infected by Perkinsus olseni cl...
ORGANISM(S): Ruditapes decussatus 
2012-07-31 | E-GEOD-36276 | biostudies-arrayexpress
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