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GenomicsGenome-wide nucleosome position maps in Saccharomyces cerevisiae
Paired-end sequencing study of nucleosomal DNA prepared from budding yeast by micrococcal nuclease digestion. Comparison of control cells with cells treated with 10 mM 3-aminotriazole for 20 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2011-07-20 | E-GEOD-26493 | biostudies-arrayexpress
UnknownRobust Automated Truncation Point Selection for Molecular Simulations.
Not available
S-EPMC11736681 | biostudies-literature
ProteomicsImpact of increased core fucosylation on the exosome proteome in prostate cancer
Prostate cancer is the most commonly diagnosed oncogenic malignancy in men worldwide, resulting in almost 30,000 cancer-related deaths in the United States each year. Wider examination of aberrant glycosylation in prostate cancer has revealed increased expression of the glycotransferase involved in ...
ORGANISM(S): Homo sapiens (Human) 
2020-05-13 | PXD013340 | Pride
Human Glycosylation Cancer Exosomes Glycoproteomics Proteomic 
ProteomicsEvaluation of NCI-7 Cell Line Panel
Reference materials are vital to benchmarking the reproducibility of clinical tests and essential for monitoring laboratory performance for clinical proteomics. The reference material utilized for mass spectrometric analysis of the human proteome would ideally contain enough proteins to be suitably ...
ORGANISM(S): Homo sapiens (Human) 
2018-05-14 | PXD008952 | Pride
Nci-60 Proteomics reference standard Nci-7 Cptac 
ProteomicsTriple SILAC exosomal quantitative proteomic analysis
Exosomes are 30-100 nm sized membrane vesicles released by cells into extracellular space and mediate the intercellular communication via transfer of proteins and RNAs. To better understand the function of these microvesicles in lung carcinogenesis, we employed a Triple SILAC quantitative proteomic ...
ORGANISM(S): Homo sapiens (Human) 
2016-01-12 | PXD003001 | Pride
Non-small cell lung cancer Silac Exosomes Quantitative proteomics 
GenomicsThe ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacing in vivo
We addressed the roles of three nucleosome spacing enzymes (ISW1, ISW2 and CHD1) in specifying chromatin organization in S. cerevisiae. Comparison of budding yeast nucleosome positions obtained using micrococcal nuclease digestion followed by paired-end sequencing (MNase-seq). We sequenced nucleosom...
ORGANISM(S): Saccharomyces cerevisiae 
2016-02-17 | E-GEOD-69400 | biostudies-arrayexpress
UnknownAutomated Adaptive Absolute Binding Free Energy Calculations.
Not available
S-EPMC11428140 | biostudies-literature
UnknownComparison of Receptor-Ligand Restraint Schemes for Alchemical Absolute Binding Free Energy Calculations.
Not available
S-EPMC10308817 | biostudies-literature
ProteomicsReproducible Workflow for Multiplexed Deep-Scale Proteome and Phosphoproteome Analysis of Tumor Tissues by Liquid Chromatography-Mass Spectrometry

Mertins P, Tang LC, Krug K, Clark DJ, Gritsenko MA, Chen L, Clauser KR, Clauss TR, Shah P, Gillette MA, et al., Nat Protoc. 2018 Jul 9. doi: 10.1038/s41596-018-0006-9

Here we present an optimized workflow for gl...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2019-08-30 | MSV000084265 | MassIVE
TranscriptomicsTranscriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site
This study presents statistical analyses of gene expression in 5, 10 and 15 day post-fertilization (dpf) embryos of the teleost Fundulus heteroclitus treated with control vehicle (DMSO) or a potent non-ortho-PCB (PCB-126; 3,3’,4,4’,5-pentachlorobiphenyl). The embryos were from two populations: a cl...
ORGANISM(S): Fundulus heteroclitus 
2011-06-06 | E-GEOD-25245 | biostudies-arrayexpress
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