Clark W W - OmicsDI

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Unknown (2365)
Transcriptomics (661)
Genomics (59)
Proteomics (46)
Metabolomics (6)
Models (3)

Organisms

Homo sapiens (270)
Mus musculus (210)
Arabidopsis thaliana (26)
Saccharomyces cerevisiae (21)
Drosophila melanogaster (21)
Rattus norvegicus (14)
Glycine max (9)
Danio rerio (8)
Bos taurus (6)
Sus scrofa (6)
Caenorhabditis elegans (6)
Zea mays (5)
Homarus americanus (4)
Campylobacter jejuni (4)
Oryctolagus cuniculus (3)
Nasonia giraulti (3)
Mycobacterium tuberculosis (3)
Nasonia vitripennis (3)
Gallus gallus (3)
Tetranychus urticae (3)
Boehmeria nivea (2)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Hevea brasiliensis (2)
Rickettsia rickettsii (2)
Cryptopygus antarcticus (2)
Amphiura filiformis (2)
Callithrix jacchus (2)
Monodelphis domestica (2)
Harpagifer antarcticus (2)
Hordeum vulgare (2)

Organisms

Cryolaternula elliptica (1)

Repository

biostudies-arrayexpress (711)
pride (26)
MassIVE (15)
EGA (11)
MetaboLights (4)
BioModels (3)
GNPS (2)
PeptideAtlas (2)
PanoramaPublic (1)
PAXDB (1)
ENA (1)

Tissue

Cell culture (4)
Blood (3)
Epithelial cell (3)
Leaf (2)
B cell (1)
Embryonic stem cell (1)
Epithelial cell of prostate (1)
Kidney (1)
Kidney cell (1)
Lymph node (1)
Monocyte (1)
Neutrophil (1)
PBMC cell line (1)
Permanent cell line cell (1)
Plant cell (1)
Root (1)
Saliva (1)
Shoot (1)
T cell (1)
Testis (1)

Disease

HHV-6B infected (2)
Breast cancer (2)
Disease free (2)
Metastatic colorectal cancer (1)
Alzheimer's disease (1)
Whitehart (1)
Small cell lung carcinoma (1)
Neuroblastoma (1)
Adult respiratory distress syndrome (1)
Cancer (1)
Prostate adenocarcinoma (1)
Prostate carcinoma (1)
Sialolithiasis (1)

Technology Type

Mass Spectrometry (26)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (4)
Mass spectrometry (3)
Bottom-up proteomics (3)
Gel-based experiment (2)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 4000 (11)
NextSeq 500 (8)
Illumina HiSeq 2000 (7)
Q Exactive Plus (7)
Illumina NovaSeq 6000 (6)
Illumina HiSeq 2500 (5)
Orbitrap Fusion Lumos (4)
Illumina NovaSeq X (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Q Exactive (2)
SYNAPT G2-Si (2)
TSQ Altis (2)
Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
LTQ (2)
Orbitrap Exploris 480 (2)
Agilent Tapestation 4200 (1)
10x Chromium with a target of 5,000 cells. Chromium Single Cell 3’ Library & Gel Bead Kit v2 (1)
10X Genomics reagent kit (1)
Qiagen (1)
TruSeq Stranded mRNA Sample Preparation Kit (Illumina) (1)
ProScanArray Microarray Scanner [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
NA (1)
GenePix 4000B (1)
HiSeq X Ten (1)
LTQ FT (1)

Publication Date

2015 (129)
2010 (109)
2012 (98)
2013 (91)
2014 (83)
2011 (52)
2016 (48)
2009 (25)
2008 (24)
2018 (14)
2020 (12)
2022 (11)
2021 (11)
2005 (9)
2025 (9)
2024 (9)
2023 (8)
2007 (7)
2026 (5)
2019 (4)
2017 (3)
2006 (3)

UNIPROT ID/AC

2711.XP_006464469.1 (1)
2711.XP_006464485.1 (1)
2711.XP_006464486.1 (1)
2711.XP_006465039.1 (1)
2711.XP_006465481.1 (1)
2711.XP_006465554.1 (1)
2711.XP_006465598.1 (1)
2711.XP_006465717.1 (1)
2711.XP_006465764.1 (1)
2711.XP_006466032.1 (1)
2711.XP_006466189.1 (1)
2711.XP_006466240.1 (1)
2711.XP_006466243.1 (1)
2711.XP_006466346.1 (1)
2711.XP_006466347.1 (1)
2711.XP_006466348.1 (1)
2711.XP_006466352.1 (1)
2711.XP_006466586.1 (1)
2711.XP_006467060.1 (1)
2711.XP_006467330.1 (1)
2711.XP_006467511.1 (1)
2711.XP_006468195.1 (1)
2711.XP_006468459.1 (1)
2711.XP_006468477.1 (1)
2711.XP_006468930.1 (1)
2711.XP_006468931.1 (1)
2711.XP_006469038.1 (1)
2711.XP_006469071.1 (1)
2711.XP_006469105.1 (1)
2711.XP_006469136.1 (1)

CHEBI ID

CHEBI:16449 (2)
CHEBI:28867 (2)
CHEBI:10101 (1)
CHEBI:10111 (1)
CHEBI:113543 (1)
CHEBI:133530 (1)
CHEBI:133925 (1)
CHEBI:135323 (1)
CHEBI:136706 (1)
CHEBI:137013 (1)
CHEBI:137503 (1)
CHEBI:140761 (1)
CHEBI:141494 (1)
CHEBI:143235 (1)
CHEBI:15318 (1)
CHEBI:15354 (1)
CHEBI:15428 (1)
CHEBI:156156 (1)
CHEBI:156470 (1)
CHEBI:15724 (1)
CHEBI:15741 (1)
CHEBI:15776 (1)
CHEBI:158491 (1)
CHEBI:1588 (1)
CHEBI:15882 (1)
CHEBI:15891 (1)
CHEBI:159235 (1)
CHEBI:159447 (1)
CHEBI:15971 (1)
CHEBI:159727 (1)

Metabolite Name

()-Octanoylcarnitine (1)
(-)-11-Hydroxy-9,15,16-trioxooctadecanoic acid (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(E)-3-methylglutaconic acid (1)
(R)-(+)-2-Pyrrolidone-5-carboxylic acid (1)
1,2-Benzisothiazol-3(2H)-one (1)
1-Ipomeanol (1)
1-Linoleoylglycerophosphocholine (1)
1-Naphthaleneacetic acid sodium salt (1)
1-Pyrroline (1)
11-Dehydrocorticosterone (1)
11-Hydroxyprogesterone 11-glucuronide (1)
12-hydroxyjasmonic acid (1)
13(S)-HODE methyl ester (1)
15(R)-15-methyl Prostaglandin A2 (1)
15-deoxy-12,14-Prostaglandin A2 (1)
17-Methyl-18-norandrosta-4,13(17)-dien-3-one (1)
17-[(Benzylamino)methyl]estra-1,3,5(10)-triene-3,17beta-diol (1)
18-Nor-4(19),8,11,13-abietatetraene (1)
2,6 dimethylheptanoyl carnitine (1)
2-(1-Propenyl)-delta1-piperideine (1)
2-(Ethylamino)-4,5-dihydroxybenzamide (1)
2-Amino-5-benzoylbenzimidazole (1)
2-Hydroxycinnamic acid (1)
2-Hydroxymethylclavam (1)
2-Mercaptobenzothiazole (1)
2-Methylbutyroylcarnitine (1)
2-Phenylethyl beta-D-glucopyranoside (1)
2-Pyrrolidinone (1)
2-[(2-Furanylmethyl)thio]-6-methylpyrazine (1)

IsPrivate

False (3)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (3)

Study type

Transcription profiling by array (414)
RNA-seq of coding RNA (122)
ChIP-seq (29)
Comparative genomic hybridization by array (25)
Unknown experiment type (22)
Methylation profiling by high throughput sequencing (17)
Methylation profiling by array (12)
RNA-seq of non coding RNA (12)
Other (11)
ChIP-chip by tiling array (9)
RNA-seq of coding RNA from single cells (7)
Animal - High-throughput sequencing (6)
Transcription profiling by tiling array (5)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (2)
Genotyping by array (2)
Bisulfite-seq (2)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
ATAC-seq (1)
DNA-seq (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2021 (268)
2022 (266)
2015 (232)
2024 (227)
2025 (225)
2023 (216)
2012 (177)
2020 (165)
2014 (160)
2013 (160)
2019 (157)
2016 (157)
2010 (149)
2018 (135)
2011 (104)
2017 (96)
2009 (57)
2008 (52)
2026 (28)
2007 (18)
2005 (10)
2002 (5)
2006 (4)
2004 (4)
2003 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

1 Garvan Institute of Medical Research and The Kinghorn Cancer Centre, 384 Victoria Street Darlinghurst Sydney, NSW, 2010, Australia. 2 St Vincent’s Clinical School, Faculty of Medicine, UNSW Sydney, Australia. (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
Boston College (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (1)
Cancer Program, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Melbourne, VIC, 3800, Australia (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
Chinese Academy of Medical Science (CAMS) Oxford Institute (COI), University of Oxford; Oxford, U.K.; 3MRC Human Immunology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford; Oxford, U.K. (1)
Clinical Chemistry Division, Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA (1)
Department of Biochemistry and Cell Biology; Rice University; Houston, TX USA (1)
Department of Pharmacy and Biotechnology - University of Bologna (1)
Department of Plant Pathology University of California-Davis One Shield Avenue, Davis, CA 95616 (1)
Department of Plant Pathology, Entomology, and Microbiology. Iowa State University (1)
Departments of Chemistry, Biological Sciences, Microbiology and Immunology, Vanderbilt University (1)
Institute for Ophthalmic Research, University of Tuebingen (1)
LSUHSC, Department of Biochemistry and Molecular Biology, Proteomics Core Facility, New Orleans, LA 70112 (1)
Monash Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
Professor, Department of Biochemistry, University of Cambridge, UK. (1)
Reguera Lab, Department of Microbiology, Genetic, and Immunology, Michigan State University, Michigan, USA (1)
Sapienza University of Rome (1)
St.Jude Children's Research Hospital (1)
University of Dundee, School of Life Sciences (1)
University of Edinburgh, Wellcome Centre for Cell Biology, Edinburgh, UK. Technische Universität Berlin, Chair of Bioanalytics, Berlin, Germany. (1)
University of North Carolina at Chapel Hill, Department of Chemistry (1)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK (1)

Tags

xref:EuropePMC:PMC3857432 (1)

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CGH: IsoClark vs. Clark

Soybean near-isogenic lines (NILs) differing in iron deficiency chlorosis (IDC) tolerance were genotyped to determine differential genetic introgressions from the donor line T203 into the Clark background. The CGH comparison reveals T203 loci that are differentially introgressed between the IsoClark...

ORGANISM(S): Glycine max

2013-03-02 | E-GEOD-44789 | biostudies-arrayexpress

Identification of avian W-linked contigs by short-read sequencing.

Not available

S-EPMC3428670 | biostudies-literature

Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators.

Not available

S-EPMC5359078 | biostudies-literature

Bacillus subtilis 168, WT vs. ΔMWX, WT vs. Δ7ECF, Δ7ECF vs. ΔMWX.

Bacillus subtilis encodes seven extracytoplasmic function (ECF) sigma factors. Three (sigma M, sigma W and simga X) mediate responses to cell envelope active antibiotics. The functions of sigma Y, sigma Z, sigma V, and YlaC remain largely unknown, and strong inducers of these sigma factors and their...

ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168

2010-07-21 | E-GEOD-22930 | biostudies-arrayexpress

Potentiation of Phase Variation in Multiple Outer-Membrane Proteins During Spread of the Hyperinvasive Neisseria meningitidis Serogroup W ST-11 Lineage.

Not available

S-EPMC6735796 | biostudies-literature

Structural genomic variation among soybean NIL's using CGH approach

CGH was used to map structural variation (introgressed regions) among soybean iron-inefficient NIL IsoClark with its iron-efficient recurrent parent Clark and donor parent T203. Another NIL series HiPro, LoPro was also used in the study. CGH Comparisions were made among a NIL IsoClark with its paren...

ORGANISM(S): Glycine max

2011-08-01 | E-GEOD-31072 | biostudies-arrayexpress

Kinetics of maternally-derived serogroup A, C, Y and W-specific meningococcal immunoglobulin G in Malian women and infants.

Not available

S-EPMC6990398 | biostudies-literature

Differential role of pannexin-1/ATP/P2X₇ axis in IL-1β release by human monocytes.

Not available

S-EPMC5507675 | biostudies-literature

Translation and cultural adaption of MacLeod Clark professional identity scale among Chinese therapy students.

Not available

S-EPMC11774393 | biostudies-literature

Identification and mapping of a recessive allele, dt3, specifying semideterminate stem growth habit in soybean.