Clarke D D - OmicsDI

Show results for

Unknown (2598)
Transcriptomics (117)
Genomics (89)
Proteomics (43)
Metabolomics (11)
Models (3)
Other (1)

Organisms

Homo sapiens (135)
Schizophyllum commune H4-8 (35)
Mycobacterium tuberculosis SP7 (35)
Mycobacterium tuberculosis SP10 (35)
Mycobacterium tuberculosis SP13 (35)
Mycobacterium tuberculosis SP22 (35)
Chlamydomonas reinhardtii (35)
Enterococcus mundtii CRL35 (35)
Oncorhynchus tshawytscha (35)
Pseudomonas canadensis (35)
Mus musculus (32)
Colinus virginianus (9)
Arabidopsis thaliana (6)
Saccharomyces cerevisiae (5)
Drosophila melanogaster (4)
Rattus norvegicus (3)
Heterocephalus glaber (3)
Bathyergus suillus (2)
Chlamydomonas reinhardtii (2)
Cricetulus griseus (2)
Neogale vison (1)
Felis catus (1)
Canis lupus familiaris (1)
Yersinia pseudotuberculosis (1)
Hordeum vulgare (1)
Ovis aries (1)
Escherichia coli (1)
Gallus gallus (1)
Burkholderia cenocepacia (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (141)
EGA (65)
pride (35)
MetaboLights (11)
MassIVE (7)
BioModels (3)
geo (1)
GPMDB (1)
iProX (1)
ENA (1)

Tissue

Cell culture (5)
Epithelial cell (4)
Stem cell (3)
Heart (2)
Cell line cell (2)
Blood plasma (2)
B cell (2)
Promyelocyte (1)
Cardiocyte differentiation (1)
H9c2 cell (1)
Respiratory mucus (1)
Synovial tissue (1)
Chronic lymphocytic leukemia cell (1)
Cardiac muscle tissue (1)
Eggshell (1)
Pancreatic ductal cell (1)
Osteosarcoma cell line (1)
Venom (1)
B-lymphocyte (1)
Prostate gland (1)
Pancreas (1)
Bile (1)
Embryonic stem cell (1)
Extracellular vesicle (1)
Early embryonic cell (1)
Plant cell (1)
Macrophage (1)
Brain (1)
Leaf (1)
Fibroblast (1)

Disease

Chronic lymphocytic leukemia (2)
Cerebral degeneration (1)
Retinal degeneration (1)
Huntington's disease (1)
Ocular albinism (1)
Retinal disease (1)
Retinal detachment (1)
Parkinson's disease (1)
Multibacillary (1)
Head and neck squamous cell carcinoma (1)
Lung cancer (1)
Not Available (1)
Pancreatic ductal carcinoma (1)
Age related macular degeneration (1)
Parkinsonism (1)
Cardiovascular system disease (1)
Osteoarthritis (1)
Alzheimer's disease (1)
COVID-19 (1)
Breast cancer (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (35)
Shotgun proteomics (20)
Mass spectrometry (6)
Bottom-up proteomics (5)
NMR spectroscopy (3)
SWATH MS (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina 450K, Bisulfite-Seq (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ISelect Beadchip (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Unknown (1)
Illumina Genome Analyzer II (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)
All-ion fragmentation (1)
SRM/MRM (1)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
NextSeq 500 (5)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (4)
Q Exactive (3)
PromethION (2)
PacBio RS II (2)
Orbitrap Eclipse (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Unix (1)
Variable Atmosphere Incubator (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Orbitrap Ascend (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Varian INOVA (1)
Direct infusion MS - negative (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Direct infusion MS - positive (1)
SYNAPT HDMS (Waters) (1)
INOVA (1)
MS Imaging - (1)

Publication Date

2015 (23)
2011 (22)
2013 (20)
2010 (16)
2022 (13)
2012 (13)
2014 (11)
2023 (10)
2026 (10)
2021 (9)
2025 (8)
2017 (8)
2009 (7)
2008 (7)
2024 (5)
2018 (5)
2016 (5)
2006 (3)
2020 (2)
2019 (1)

UNIPROT ID/AC

P37173 (1)
Q15796 (1)
Q13485 (1)
P36897 (1)

CHEBI ID

CHEBI:18237 (5)
CHEBI:25017 (5)
CHEBI:25094 (4)
CHEBI:22660 (4)
CHEBI:22653 (4)
CHEBI:17234 (4)
CHEBI:28300 (4)
CHEBI:24898 (4)
CHEBI:28044 (4)
CHEBI:27266 (4)
CHEBI:26271 (3)
CHEBI:18186 (3)
CHEBI:26986 (3)
CHEBI:16811 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:17268 (3)
CHEBI:6650 (3)
CHEBI:16196 (3)
CHEBI:16335 (3)
CHEBI:15891 (3)
CHEBI:16449 (3)
CHEBI:29016 (3)
CHEBI:30772 (3)
CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:25801 (2)
CHEBI:31969 (2)
CHEBI:16065 (2)
CHEBI:18367 (1)

Metabolite Name

Leucine (4)
Valine (4)
Tyrosine (4)
Alanine (4)
Phenylalanine (4)
Pantothenic acid (3)
Methionine (3)
Arginine (3)
Asparagine (3)
Isoleucine (3)
Glucose (3)
Uridine (3)
Creatine (3)
Tryptophan (3)
Inosine (3)
Scopolin (2)
Arabitol (2)
Galactonic acid (2)
Lactic acid (2)
Histidine (2)
Glycine (2)
Sorbitol (2)
Succinic acid (2)
Aconitic acid (2)
Choline (2)
Taurine (2)
Xanthosine (2)
Citric acid (2)
Traumatic acid (2)
Lysine (2)

IsPrivate

False (3)

First Public Date

2015 (1)

Modelling Approach

Ordinary differential equation model (2)
Logical model (1)

Study type

Transcription profiling by array (90)
ChIP-seq (19)
RNA-seq of coding RNA (14)
Comparative genomic hybridization by array (4)
DNA-seq (4)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA from single cells (2)
Genotyping by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (287)
2021 (252)
2025 (244)
2023 (233)
2024 (220)
2020 (201)
2019 (179)
2018 (175)
2015 (148)
2017 (131)
2016 (119)
2014 (109)
2011 (82)
2013 (80)
2012 (80)
2010 (54)
2009 (40)
2026 (33)
2008 (24)
2006 (13)
2007 (10)
2005 (7)
2004 (4)
2003 (4)
2001 (4)
2002 (2)
1997 (2)
2000 (1)
1999 (1)

Lab affiliation

College of Life Sciences, University of Dundee (2)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (2)
Department for BioMedical Research (DBMR) University of Bern Murtenstrasse 35 3008 Bern Switzerland (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dow St, Dundee, DD1 5EH, Scotland, UK (1)
Exploring the Dynamics of Proteomes laboratory; UGA/CEA/Inserm U1038 CEA/Grenoble 17 Avenue des Martyrs F-38054 Grenoble (1)
CDSS Bioanalytical Facility, Liverpool Shared Research Facilities, University of Liverpool (1)
University of Catanzaro, Viale Europa, Italy (1)
Proteomics Resource Center, The Rockefeller University, New York, 10065, NY, USA (1)
MRC Cancer Unit, University of Cambridge; Hutchison/MRCResearch Centre, Box 197, Cambridge Biomedical Campus, Cambridge, CB2 0XZ, UK (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Centre for Gene Regulation and Expression University of Dundee (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Centre for Cancer Drug Discovery Institute of Cancer Research London (1)
Department of Biology, Washington and Lee University (1)
Pharmaceutical Chemistry, UCSF (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Sonja Hess, Dr. rer. nat. Director, Dynamic Omics AstraZeneca R&D Antibody Discovery and Protein Engineering One Medimmune Way, Gaithersburg, MD 20878 (1)
McGill University Department of Pharmacology and Therapeutics Montreal, QC (1)
Laboratory for Systems Theory and Automatic Control, Institute for Automation Engineering (IFAT), Otto-von-Guericke University Magdeburg, 39106 Magdeburg, Germany (1)
Division of Molecular and Cellular Functions School of Biological Sciences FBMH The University of Manchester (1)
Lab PI (1)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
The University of Sydney (1)
Centre for Proteome Research University of Liverpool Liverpool L69 7ZB (1)
Imperial College London (1)
Proteas Bioanalytics Inc. (1)
university of florida (1)
University of Pittsburgh (1)
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA (1)