Clarke E E - OmicsDI

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Unknown (2398)
Transcriptomics (108)
Genomics (92)
Proteomics (44)
Metabolomics (10)
Models (1)

Organisms

Homo sapiens (151)
Mus musculus (32)
Colinus virginianus (9)
Saccharomyces cerevisiae (5)
Escherichia coli (5)
Drosophila melanogaster (4)
Equus caballus (4)
Heterocephalus glaber (3)
Arabidopsis thaliana (3)
Bathyergus suillus (2)
Chlamydomonas reinhardtii (2)
Cricetulus griseus (2)
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Yersinia pseudotuberculosis (1)
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Ovis aries (1)
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Burkholderia cenocepacia (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Aepyornis sp. (1)
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Galloanserae (1)
Latrodectus hesperus (1)
Macaca mulatta (1)
Mullerornis (1)
Parasteatoda tepidariorum (1)

Organisms

human gut metagenome (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (131)
EGA (67)
pride (39)
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geo (1)

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Disease

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Technology Type

Mass Spectrometry (39)
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Instrument Platform

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Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2011 (25)
2015 (21)
2013 (17)
2022 (13)
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2014 (12)
2010 (12)
2012 (11)
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2016 (3)
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2007 (2)
2006 (2)
2020 (2)

UNIPROT ID/AC

P36897 (1)
P37173 (1)
Q13485 (1)
Q15796 (1)

CHEBI ID

CHEBI:15891 (4)
CHEBI:18237 (4)
CHEBI:25017 (4)
CHEBI:30772 (4)
CHEBI:15354 (3)
CHEBI:15366 (3)
CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:16449 (3)
CHEBI:16919 (3)
CHEBI:17234 (3)
CHEBI:17268 (3)
CHEBI:18012 (3)
CHEBI:22653 (3)
CHEBI:22660 (3)
CHEBI:24898 (3)
CHEBI:25094 (3)
CHEBI:27266 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:30768 (3)
CHEBI:15355 (2)
CHEBI:15940 (2)
CHEBI:16196 (2)
CHEBI:16335 (2)
CHEBI:16359 (2)
CHEBI:16411 (2)
CHEBI:16543 (2)
CHEBI:16704 (2)
CHEBI:18367 (1)

Metabolite Name

Alanine (5)
Leucine (5)
Creatine (4)
Isoleucine (4)
Phenylalanine (4)
Tyrosine (4)
Valine (4)
Arginine (3)
Asparagine (3)
Choline (3)
Glycine (3)
Inosine (3)
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Methionine (3)
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Proline (3)
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Taurine (3)
Threonine (3)
Tryptophan (3)
Uridine (3)
1-Methyladenosine (2)
4-Guanidinobutyric acid (2)
4-Hydroxybenzaldehyde (2)
4-pyridoxic acid (2)
5-Methylcytidine (2)
7-Methylguanine (2)
Acetylcarnitine (2)
Aspartic acid (2)
Betaine (2)

IsPrivate

False (1)

First Public Date

2026 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (82)
ChIP-seq (19)
RNA-seq of coding RNA (15)
DNA-seq (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (273)
2023 (249)
2021 (236)
2025 (221)
2024 (208)
2019 (172)
2020 (158)
2018 (144)
2015 (132)
2017 (123)
2016 (110)
2014 (110)
2011 (82)
2013 (74)
2012 (61)
2010 (44)
2026 (37)
2009 (33)
2008 (21)
2006 (15)
2007 (12)
2004 (5)
2003 (3)
2000 (3)
2001 (1)
1999 (1)
1991 (1)

Lab affiliation

College of Life Sciences, University of Dundee (2)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (2)
CDSS Bioanalytical Facility, Dept Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool (1)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
CDSS Bioanalytical Facility, Pharmacology & Therapeutics, LIV-SRF, University of Liverpool, UK (1)
Centre for Gene Regulation and Expression University of Dundee (1)
Centre for Proteome Research Institute of Integrative Biology University of Liverpool Biosciences Building Crown Street Liverpool L69 7ZB UK (1)
Centre for Proteome Research University of Liverpool Liverpool L69 7ZB (1)
Department for BioMedical Research (DBMR) University of Bern Murtenstrasse 35 3008 Bern Switzerland (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biology, Washington and Lee University (1)
Department of Chemistry, University of Oxford (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy (1)
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA (1)
Department of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY (1)
Division of Molecular and Cellular Functions School of Biological Sciences FBMH The University of Manchester (1)
Imperial College London (1)
Institute of Cancer Research (1)
Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia (1)
Kavli Institute for NanoScience Discovery, Dorothy Crowfoot Hodgkin Building, University of Oxford, OX1 3QU, United Kingdom Department of Chemistry, University of Oxford, OX1 3TA, United Kingdom (1)
Laboratory for Systems Theory and Automatic Control, Institute for Automation Engineering (IFAT), Otto-von-Guericke University Magdeburg, 39106 Magdeburg, Germany (1)
MRC Cancer Unit, University of Cambridge; Hutchison/MRCResearch Centre, Box 197, Cambridge Biomedical Campus, Cambridge, CB2 0XZ, UK (1)
MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 https://msap-lab.fr/ (1)
Manchester Cell Matrix Centre | Division of Cancer Sciences | School of Medical Sciences | Faculty of Biology, Medicine and Health The University of Manchester | Michael Smith Building | Oxford Road | Manchester M13 9PT (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
National Institute for Bioprocessing Research and Training (1)
Pacific Northwest National Laboratory (1)
Proteas Bioanalytics Inc. (1)
School of Biomedical Sciences, Faculty of Medicine, Nursing and Health Sciences, Monash University, Wellington Road, Clayton, Victoria 3800, Australia. (1)

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Transcription profiling of E. coli to investigate bacterial adrenergic signaling

The ability to respond to stress is at the core of an organismâ€™s survival. The hormones epinephrine and norepinephrine play a central role in stress responses in mammals, which require the synchronized interaction of the whole neuroendocrine system. Bacteria also sense and respond to epinephrine a...

ORGANISM(S): Escherichia coli

2009-11-16 | E-GEOD-15050 | biostudies-arrayexpress

Predictors for adoption of e-learning among health professional students during the COVID-19 lockdown in a private university in Uganda.

Not available

S-EPMC9463679 | biostudies-literature

Pervasive endonucleolytic cleavage mediated by the direct entry mode of RNase E

Here we show using RNA-seq that cleavage by RNase E direct entry pervades in both the degradation and processing of RNA. We also give further evidence that direct entry is facilitated by cooperative interaction with segments in addition to the ones in which cleavage occurs. RNA seq profiles were com...

ORGANISM(S): Escherichia coli

2014-06-10 | E-GEOD-58285 | biostudies-arrayexpress

e-Consent: The design and implementation of consumer consent mechanisms in an electronic environment.

Not available

S-EPMC353020 | biostudies-literature

Adjacent single-stranded regions mediate processing of tRNA precursors by RNase E direct entry.

Not available

S-EPMC3985628 | biostudies-literature

The recognition of structured elements by a conserved groove distant from domains associated with catalysis is an essential determinant of RNase E.

Not available

S-EPMC9841416 | biostudies-literature

Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli.